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CcUC02G028180 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G028180
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionATP synthase subunit beta, chloroplastic
Genome locationCicolChr02:21622930..21623259
RNA-Seq ExpressionCcUC02G028180
SyntenyCcUC02G028180
Gene Ontology termsGO:0042776 - mitochondrial ATP synthesis coupled proton transport (biological process)
GO:0005753 - mitochondrial proton-transporting ATP synthase complex (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domainsIPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACF35672.1 ATP synthase beta subunit, partial [Lasjia claudiensis]5.3e-2990.91Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLATKGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

CAB4287509.1 unnamed protein product [Prunus armeniaca]8.7e-3277.78Show/hide
Query:  FKRDLKYQRYWVEC-------LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        F+ D KY  YWVEC        +LS EMG+LQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  FKRDLKYQRYWVEC-------LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

TKY69249.1 ATP synthase subunit beta [Spatholobus suberectus]2.8e-3079.38Show/hide
Query:  ISSVSFKRDLKYQRYWVECLSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +SS S K+DLKY  YWVEC  L  EMGSLQERITSTKEGSITSIQ VYVP +DL DPAPAT FAHLD TTVLSRGL  KGIYP VDPLDS STMLQP
Subjt:  ISSVSFKRDLKYQRYWVECLSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

TXG60897.1 hypothetical protein EZV62_012260 [Acer yangbiense]3.1e-2991.03Show/hide
Query:  LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        L+LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDP PAT FAHLDATTVLSRGLATKGIYPTVDPLDS STMLQP
Subjt:  LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

VDD22437.1 unnamed protein product [Brassica rapa]4.8e-3069.83Show/hide
Query:  MLMNKTCFYLSIISSVSFKRDLKYQRYWVECLS-------LSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGI
        MLM+KT FYLS ISS   +   +         S       LS EMGSLQERITSTK+GSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGI
Subjt:  MLMNKTCFYLSIISSVSFKRDLKYQRYWVECLS-------LSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGI

Query:  YPTVDPLDSNSTMLQP
        YP VDPLDS STMLQP
Subjt:  YPTVDPLDSNSTMLQP

TrEMBL top hitse value%identityAlignment
A0A2N9GZW1 H(+)-transporting two-sector ATPase3.9e-3066.95Show/hide
Query:  MNKTCFYLSIISSVSFKR--DLKYQRYWVECL--------SLSIEMGSL-QERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATK
        + KT   + +I++++     D KY  YWVECL         LS EMG   QERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA+K
Subjt:  MNKTCFYLSIISSVSFKR--DLKYQRYWVECL--------SLSIEMGSL-QERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATK

Query:  GIYPTVDPLDSNSTMLQP
        GIYP VDPLDS STMLQP
Subjt:  GIYPTVDPLDSNSTMLQP

A0A3P6CUH0 H(+)-transporting two-sector ATPase2.3e-3069.83Show/hide
Query:  MLMNKTCFYLSIISSVSFKRDLKYQRYWVECLS-------LSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGI
        MLM+KT FYLS ISS   +   +         S       LS EMGSLQERITSTK+GSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGI
Subjt:  MLMNKTCFYLSIISSVSFKRDLKYQRYWVECLS-------LSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGI

Query:  YPTVDPLDSNSTMLQP
        YP VDPLDS STMLQP
Subjt:  YPTVDPLDSNSTMLQP

A0A5C7HUX7 H(+)-transporting two-sector ATPase1.5e-2991.03Show/hide
Query:  LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        L+LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDP PAT FAHLDATTVLSRGLATKGIYPTVDPLDS STMLQP
Subjt:  LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

A0A6J5VEN7 H(+)-transporting two-sector ATPase4.2e-3277.78Show/hide
Query:  FKRDLKYQRYWVEC-------LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        F+ D KY  YWVEC        +LS EMG+LQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  FKRDLKYQRYWVEC-------LSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

B4YQ48 ATP synthase subunit beta (Fragment)2.5e-2990.91Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLATKGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

SwissProt top hitse value%identityAlignment
Q31794 ATP synthase subunit beta, chloroplastic2.6e-3189.61Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

Q3V527 ATP synthase subunit beta, chloroplastic2.6e-3189.61Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

Q70XZ6 ATP synthase subunit beta, chloroplastic2.6e-3189.61Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

Q95AF8 ATP synthase subunit beta, chloroplastic2.6e-3189.61Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

Q9MRV8 ATP synthase subunit beta, chloroplastic2.6e-3189.61Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMGSLQERITSTKEGSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

Arabidopsis top hitse value%identityAlignment
AT5G08670.1 ATP synthase alpha/beta family protein3.4e-2671.43Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +L+ ++G+LQERIT+TK+GSITS+Q +YVP DDLTDPAPAT FAHLDATTVLSR ++  GIYP VDPLDS S ML P
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

AT5G08680.1 ATP synthase alpha/beta family protein3.4e-2671.43Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +L+ ++G+LQERIT+TK+GSITS+Q +YVP DDLTDPAPAT FAHLDATTVLSR ++  GIYP VDPLDS S ML P
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

AT5G08690.1 ATP synthase alpha/beta family protein3.4e-2671.43Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +L+ ++G+LQERIT+TK+GSITS+Q +YVP DDLTDPAPAT FAHLDATTVLSR ++  GIYP VDPLDS S ML P
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP

ATCG00480.1 ATP synthase subunit beta1.2e-3187.01Show/hide
Query:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP
        +LS EMG+LQERITSTK+GSITSIQ VYVP DDLTDPAPAT FAHLDATTVLSRGLA KGIYP VDPLDS STMLQP
Subjt:  SLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNSTMLQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGAATAAGACATGCTTCTATTTATCGATAATATCTTCCGTTTCGTTCAAGCGGGATCTGAAGTATCAGCGTTACTGGGTAGAATGCCTTAGCCTTAGT
ATTGAAATGGGTTCCTTACAAGAAAGAATTACTTCTACCAAGGAAGGGTCCATAACTTCTATTCAAACTGTTTATGTACCTTTTGACGATTTAACCGATCCTGCT
CCTGCCACCATATTTGCACATTTGGATGCTACTACCGTACTATCAAGAGGATTAGCTACCAAAGGTATCTATCCAACAGTAGATCCTTTAGATTCAAACTCAACT
ATGCTACAACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGAATAAGACATGCTTCTATTTATCGATAATATCTTCCGTTTCGTTCAAGCGGGATCTGAAGTATCAGCGTTACTGGGTAGAATGCCTTAGCCTTAGT
ATTGAAATGGGTTCCTTACAAGAAAGAATTACTTCTACCAAGGAAGGGTCCATAACTTCTATTCAAACTGTTTATGTACCTTTTGACGATTTAACCGATCCTGCT
CCTGCCACCATATTTGCACATTTGGATGCTACTACCGTACTATCAAGAGGATTAGCTACCAAAGGTATCTATCCAACAGTAGATCCTTTAGATTCAAACTCAACT
ATGCTACAACCCTGA
Protein sequenceShow/hide protein sequence
MLMNKTCFYLSIISSVSFKRDLKYQRYWVECLSLSIEMGSLQERITSTKEGSITSIQTVYVPFDDLTDPAPATIFAHLDATTVLSRGLATKGIYPTVDPLDSNST
MLQP