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CcUC02G028990 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G028990
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
Genome locationCicolChr02:23813333..23813937
RNA-Seq ExpressionCcUC02G028990
SyntenyCcUC02G028990
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000421 - autophagosome membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN62004.2 hypothetical protein Csa_005914 [Cucumis sativus]7.8e-2168.48Show/hide
Query:  DNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGGDGGGWRRGGVREEVFEAGVGLKRGHFD-VGEF
        D+ GEPLDA++TVLLE   +G V G G  EHGLKVG+GGVFDK V DGE      VEG G GG  RR GV EEVFEAGVGLKRGHFD VGEF
Subjt:  DNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGGDGGGWRRGGVREEVFEAGVGLKRGHFD-VGEF
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAA
GGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCC
GGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAA
GGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCC
GGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA
Protein sequenceShow/hide protein sequence
MLTDNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGGDGGGWRRGGVREEVFEAGVGLKRGHFDVGEF