; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G030030 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G030030
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationCicolChr02:25328525..25330276
RNA-Seq ExpressionCcUC02G030030
SyntenyCcUC02G030030
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3366.37Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTL Q KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]4.8e-3646.84Show/hide
Query:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS
        +S+TPHFFK+IL   LTQ KL V KKFV +HGEA+Q +E++LKVANG +WKVG+ K NGKVWFEKGW++F +F+S  +GYFLTFRYE N CF+V IFD S
Subjt:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS

Query:  AIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEENICVKTMEINNNIAQTLLSPT--NKRMKIRSDQAGGRKVICKSHEFQKSR
        A E EY +  F +                 ++ E E FE+ I V        I QT L     +K+MKI +D       + ++ +FQ S+
Subjt:  AIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEENICVKTMEINNNIAQTLLSPT--NKRMKIRSDQAGGRKVICKSHEFQKSR

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]2.9e-3366.37Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTL Q KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]3.8e-3366.37Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTL Q KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]7.7e-3467.26Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTLTQ KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

TrEMBL top hitse value%identityAlignment
A0A1S4E1R2 B3 domain-containing transcription factor VRN1-like3.7e-2651.03Show/hide
Query:  VANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEYSITSFKEYDNKIITDGKNKGFQ--VLVKKEREVFEEN
        + +G KWKVGL K N KVWFEKGWEEF KFHS D G+FLTFRYEGN CF VVIFD +A E EY I+   ++DNK + + K K  Q  + +K+ R+   E+
Subjt:  VANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEYSITSFKEYDNKIITDGKNKGFQ--VLVKKEREVFEEN

Query:  ICVKTMEINNNIAQTLLSPTNKRMKIRSDQAGGRKVICKSHEFQK
         CV          QTL     K+MK  SD+ G  KVI +SHE Q+
Subjt:  ICVKTMEINNNIAQTLLSPTNKRMKIRSDQAGGRKVICKSHEFQK

A0A2P6RVX8 Putative transcription factor B3-Domain family1.0e-2355.05Show/hide
Query:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS
        SS+TPHFF+IIL  T   +K+ + KKFV K+GE V  +  +LK+ +G +W+V L + NGKVWFE+GW EF+KF S D G FL FRYEGN  F V IFD +
Subjt:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS

Query:  AIENEYSIT
        A E +Y IT
Subjt:  AIENEYSIT

A0A6J1E0D8 B3 domain-containing protein At4g01580-like2.3e-3646.84Show/hide
Query:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS
        +S+TPHFFK+IL   LTQ KL V KKFV +HGEA+Q +E++LKVANG +WKVG+ K NGKVWFEKGW++F +F+S  +GYFLTFRYE N CF+V IFD S
Subjt:  SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS

Query:  AIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEENICVKTMEINNNIAQTLLSPT--NKRMKIRSDQAGGRKVICKSHEFQKSR
        A E EY +  F +                 ++ E E FE+ I V        I QT L     +K+MKI +D       + ++ +FQ S+
Subjt:  AIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEENICVKTMEINNNIAQTLLSPT--NKRMKIRSDQAGGRKVICKSHEFQKSR

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like1.4e-3366.37Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTL Q KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like1.9e-3366.37Show/hide
Query:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        MASS  S+TPHFFK+IL QTL Q KL +  KFVRKHGEA++ +E+ LKVA+G +WKVGL K + K+WFEKGWEEF KF+S +IG+FLTFRYEGN CF+VV
Subjt:  MASS-SSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSI
        IFD +A E EY +
Subjt:  IFDHSAIENEYSI

SwissProt top hitse value%identityAlignment
Q7XS75 Putative B3 domain-containing protein Os04g03469004.1e-0627.73Show/hide
Query:  ASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKH--GEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV
        A+ +S  P F  ++L   +   K+ +  KFVR +  GE +  +   +    G  W+V L+K    V+   GW +F  FH    G  + FRYEGN  F + 
Subjt:  ASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKH--GEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVV

Query:  IFDHSAIENEYSITSFKEY
        +F  +  + ++       Y
Subjt:  IFDHSAIENEYSITSFKEY

Q851V5 Putative B3 domain-containing protein Os03g06216008.3e-0737.89Show/hide
Query:  HFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS
        +FFK+++     Q  + +  KF     + +QG  I LK  NG    V ++K + K+   KGW EF   H   +G FL FRY GN  F V IFD S
Subjt:  HFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS

Q8L3W1 B3 domain-containing transcription factor VRN14.9e-1541.28Show/hide
Query:  PHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIEN
        P F K+I   T+ + +L V  KFV K  + +    + L V +G  W+VGL K + K+WF+ GW+EF   +S  IGY L FRYEGN  F V IF+ S  E 
Subjt:  PHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIEN

Query:  EYSITSFKE
         Y  T   +
Subjt:  EYSITSFKE

Q8LAV5 B3 domain-containing protein REM205.4e-0625Show/hide
Query:  MASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVI
        MA  S   P FFK+ L+++ ++  L +   F+    + +    + L+   G  W V L KI+G  +  +GW +F + H    G F+TF Y+G+  F V +
Subjt:  MASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVI

Query:  FDH---SAIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEEN
        FD      +  E       + D+  + + +     V+   + E  +E+
Subjt:  FDH---SAIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEEN

Q9XIB4 B3 domain-containing protein At1g494754.9e-1539.67Show/hide
Query:  FFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEY
        F KIILL  + +  ++V  +FVR   +    D + L+   G K  + + +I  +VWFEKGW EF + HS   G+FL F YEG+ CF VVIFD SA E EY
Subjt:  FFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEY

Query:  SITSFKEYDNKIITDGKNKGF
         +    +   +++ D + +GF
Subjt:  SITSFKEYDNKIITDGKNKGF

Arabidopsis top hitse value%identityAlignment
AT1G16640.1 AP2/B3-like transcriptional factor family protein5.2e-0436.36Show/hide
Query:  NGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS
        +G  W V + K   KV+   GWE F K ++ + G +L F Y+ +  FYV+I+ H+
Subjt:  NGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHS

AT1G49475.1 AP2/B3-like transcriptional factor family protein3.5e-1639.67Show/hide
Query:  FFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEY
        F KIILL  + +  ++V  +FVR   +    D + L+   G K  + + +I  +VWFEKGW EF + HS   G+FL F YEG+ CF VVIFD SA E EY
Subjt:  FFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEY

Query:  SITSFKEYDNKIITDGKNKGF
         +    +   +++ D + +GF
Subjt:  SITSFKEYDNKIITDGKNKGF

AT3G18990.1 AP2/B3-like transcriptional factor family protein3.5e-1641.28Show/hide
Query:  PHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIEN
        P F K+I   T+ + +L V  KFV K  + +    + L V +G  W+VGL K + K+WF+ GW+EF   +S  IGY L FRYEGN  F V IF+ S  E 
Subjt:  PHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIEN

Query:  EYSITSFKE
         Y  T   +
Subjt:  EYSITSFKE

AT3G53310.1 AP2/B3-like transcriptional factor family protein3.8e-0725Show/hide
Query:  MASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVI
        MA  S   P FFK+ L+++ ++  L +   F+    + +    + L+   G  W V L KI+G  +  +GW +F + H    G F+TF Y+G+  F V +
Subjt:  MASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVI

Query:  FDH---SAIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEEN
        FD      +  E       + D+  + + +     V+   + E  +E+
Subjt:  FDH---SAIENEYSITSFKEYDNKIITDGKNKGFQVLVKKEREVFEEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCATCTTCCTCAACACCCCACTTCTTCAAGATAATTCTTCTTCAAACTCTCACTCAACTAAAGCTGGAAGTTGCAAAGAAATTTGTGAGAAAACATGGAGA
AGCTGTCCAAGGTGATGAGATATACCTTAAGGTGGCAAATGGGGGAAAGTGGAAAGTGGGATTAAATAAAATTAATGGAAAAGTTTGGTTTGAAAAAGGATGGGAGGAGT
TCACAAAGTTTCATTCATTTGATATTGGTTATTTCTTAACTTTTCGATATGAAGGCAACTTTTGTTTTTATGTCGTTATATTTGATCATTCTGCTATCGAGAATGAATAT
TCAATAACGTCTTTTAAAGAGTATGATAACAAAATAATAACTGACGGGAAAAATAAAGGATTTCAAGTACTTGTGAAAAAGGAGAGAGAAGTATTTGAAGAAAATATATG
TGTTAAAACAATGGAGATTAATAATAATATTGCTCAAACTTTGCTTTCTCCAACAAATAAGAGGATGAAAATTAGAAGTGATCAAGCTGGTGGAAGGAAAGTTATTTGCA
AATCTCATGAGTTTCAAAAAAGTCGAGCTGGACAAGAAAGAAGGCATGCACACTTC
mRNA sequenceShow/hide mRNA sequence
TTTCTCGTTCATCTCTTCCCTTCACAATACCATTTCAAGATAGAAAGAGAAAAGAAAAAGAACTAAAGCGTCCTATTGCCATGGCTTCCTCATCTTCCTCAACACCCCAC
TTCTTCAAGATAATTCTTCTTCAAACTCTCACTCAACTAAAGCTGGAAGTTGCAAAGAAATTTGTGAGAAAACATGGAGAAGCTGTCCAAGGTGATGAGATATACCTTAA
GGTGGCAAATGGGGGAAAGTGGAAAGTGGGATTAAATAAAATTAATGGAAAAGTTTGGTTTGAAAAAGGATGGGAGGAGTTCACAAAGTTTCATTCATTTGATATTGGTT
ATTTCTTAACTTTTCGATATGAAGGCAACTTTTGTTTTTATGTCGTTATATTTGATCATTCTGCTATCGAGAATGAATATTCAATAACGTCTTTTAAAGAGTATGATAAC
AAAATAATAACTGACGGGAAAAATAAAGGATTTCAAGTACTTGTGAAAAAGGAGAGAGAAGTATTTGAAGAAAATATATGTGTTAAAACAATGGAGATTAATAATAATAT
TGCTCAAACTTTGCTTTCTCCAACAAATAAGAGGATGAAAATTAGAAGTGATCAAGCTGGTGGAAGGAAAGTTATTTGCAAATCTCATGAGTTTCAAAAAAGTCGAGCTG
GACAAGAAAGAAGGCATGCACACTTC
Protein sequenceShow/hide protein sequence
MASSSSSTPHFFKIILLQTLTQLKLEVAKKFVRKHGEAVQGDEIYLKVANGGKWKVGLNKINGKVWFEKGWEEFTKFHSFDIGYFLTFRYEGNFCFYVVIFDHSAIENEY
SITSFKEYDNKIITDGKNKGFQVLVKKEREVFEENICVKTMEINNNIAQTLLSPTNKRMKIRSDQAGGRKVICKSHEFQKSRAGQERRHAHF