; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G030040 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G030040
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationCicolChr02:25334798..25335307
RNA-Seq ExpressionCcUC02G030040
SyntenyCcUC02G030040
Gene Ontology termsNA
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-1037.78Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ
        G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  AN H++  K + + +   R  + +       GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-1037.78Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ
        G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  AN H++  K + + +   R  + +       GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

XP_016902166.1 PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]1.0e-1347.79Show/hide
Query:  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM----
        KK    ++ +  +  KASKFK ITT+PSFM+ M  SYLH SN      +IP   A+T+LKETK+LIL +    + V   + V    Y    QRFEM    
Subjt:  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM----

Query:  ---TRDNSFKKKDDICVFELMKNIQ--ISFKATIFR
            RDNS  K+ DICVFELMKNIQ    FK TIFR
Subjt:  ---TRDNSFKKKDDICVFELMKNIQ--ISFKATIFR

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]4.1e-1037.78Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ
        G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  AN H++  K + + +   R  + +       GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]7.0e-1038.52Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQ
        G + +++R + TEE       A+KF+++T +PSFM+ M  SYLH   +Y    SIP   AN H++  K  N+ +   R  + +      +GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

TrEMBL top hitse value%identityAlignment
A0A0A0LM04 Uncharacterized protein1.7e-0636.43Show/hide
Query:  MISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGV--------MEYEGL
        M  RK +   TE   +++ +AS FK  T +PSFM+ M+PSY+   N      S+PR  +  ++KE+ + + L    GR      GV         E +G 
Subjt:  MISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGV--------MEYEGL

Query:  SQRFEMTRDNSFKKKDDICVFELM-KNIQISFKATIFRLP
         +RF +  DN   ++ DICVFELM K  ++ F  TIFRLP
Subjt:  SQRFEMTRDNSFKKKDDICVFELM-KNIQISFKATIFRLP

A0A1S4E1R2 B3 domain-containing transcription factor VRN1-like5.1e-1447.79Show/hide
Query:  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM----
        KK    ++ +  +  KASKFK ITT+PSFM+ M  SYLH SN      +IP   A+T+LKETK+LIL +    + V   + V    Y    QRFEM    
Subjt:  KKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVME--YEGLSQRFEM----

Query:  ---TRDNSFKKKDDICVFELMKNIQ--ISFKATIFR
            RDNS  K+ DICVFELMKNIQ    FK TIFR
Subjt:  ---TRDNSFKKKDDICVFELMKNIQ--ISFKATIFR

A0A6J1E0D8 B3 domain-containing protein At4g01580-like2.4e-0837.59Show/hide
Query:  RKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEM-----
        R K +      R + E+AS F+++T + SFMI M PSY+H     P   +IP+  A  H+K+++  I L    GR      GV   + +++  EM     
Subjt:  RKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEM-----

Query:  --TRDNSFKKKDDICVFELMKNIQISFKATIFR
           RDNS  ++  ICVFELMK  ++SFK TIFR
Subjt:  --TRDNSFKKKDDICVFELMKNIQISFKATIFR

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like2.0e-1037.78Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ
        G + +++R + +EE       A+KF+++TT+PSFM+ M  SYLH   +Y    SIP+  AN H++  K + + +   R  + +       GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMK--RFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like3.4e-1038.52Show/hide
Query:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQ
        G + +++R + TEE       A+KF+++T +PSFM+ M  SYLH   +Y    SIP   AN H++  K  N+ +   R  + +      +GV   E    
Subjt:  GMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETK--NLILLMKRFGRYVTSN---VGVMEYEGLSQ

Query:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR
          +  RDN   KK DICVFELM+  ++SFKATIFR
Subjt:  RFEMTRDNSFKKKDDICVFELMKNIQISFKATIFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTAC
ACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAA
CCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAAT
AGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA
mRNA sequenceShow/hide mRNA sequence
GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTAC
ACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAA
CCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAAT
AGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA
Protein sequenceShow/hide protein sequence
ANKVRNKGMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEMTRDN
SFKKKDDICVFELMKNIQISFKATIFRLPM