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CcUC02G030080 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G030080
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionB3 domain-containing protein REM8-like isoform X2
Genome locationCicolChr02:25351801..25352059
RNA-Seq ExpressionCcUC02G030080
SyntenyCcUC02G030080
Gene Ontology termsNA
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011179.1 B3 domain-containing transcription factor VRN1 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-0746.25Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE  +EE  E +LQ SDGR  GV    Y    + KR + L+   R     N+L++ D CVFEMIRK+ST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
XP_016902162.1 PREDICTED: B3 domain-containing protein At3g18960-like [Cucumis melo]9.3e-0746.25Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ + F E  +E+S E+ILQVSDGR     C  Y   K  K+   L    R     NNL++GD CVFEMI K+ST+I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
XP_022928080.1 B3 domain-containing protein REM8-like isoform X1 [Cucurbita moschata]1.9e-0747.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE  +EE  E +LQ SDGR  GV    Y    + KR + L+   R     N+L++ D CVFEMIRKNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
XP_022928081.1 B3 domain-containing protein REM8-like isoform X2 [Cucurbita moschata]1.9e-0747.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE  +EE  E +LQ SDGR  GV    Y    + KR + L+   R     N+L++ D CVFEMIRKNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
XP_038900379.1 B3 domain-containing transcription factor VRN1-like [Benincasa hispida]4.3e-1255Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ +SFA   LEE TE ILQVSDGRM   RCG Y   K  +R  + +   +N +  NNL++GD CVFEMIRKNS +ICFK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
TrEMBL top hitse value%identityAlignment
A0A1S4E1R1 B3 domain-containing protein At3g18960-like4.5e-0746.25Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ + F E  +E+S E+ILQVSDGR     C  Y   K  K+   L    R     NNL++GD CVFEMI K+ST+I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
A0A6J1EJ99 B3 domain-containing protein REM8-like isoform X29.0e-0847.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE  +EE  E +LQ SDGR  GV    Y    + KR + L+   R     N+L++ D CVFEMIRKNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
A0A6J1EQN2 B3 domain-containing protein REM8-like isoform X19.0e-0847.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE  +EE  E +LQ SDGR  GV    Y    + KR + L+   R     N+L++ D CVFEMIRKNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
A0A6J1I7N8 B3 domain-containing protein REM8-like isoform X12.9e-0647.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE+ +EE TE  LQ  DGR  GV    Y   K  KR + L+   R     N+L++ D CVFEMI KNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
A0A6J1I9C1 B3 domain-containing protein REM8-like isoform X22.9e-0647.5Show/hide
Query:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
        N+ R FAE+ +EE TE  LQ  DGR  GV    Y   K  KR + L+   R     N+L++ D CVFEMI KNST I FK
Subjt:  NIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLL--NNLQLGDACVFEMIRKNSTKICFK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAACATACGAAGAAGTTTTGCAGAGAAGCAATTGGAGGAGTCGACAGAGGCGATTCTTCAAGTTTCAGACGGAAGAATGTTGGGTGTTCGTTGTGGTTTGTATTG
TGGACTCAAAGAATACAAAAGAGGGCTGAATTTAAAAGGGGTTGGAAGAAATTTGCTCAATAACTTGCAACTTGGTGATGCTTGTGTTTTCGAGATGATAAGGAAAAACA
GTACGAAAATCTGTTTCAAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAACATACGAAGAAGTTTTGCAGAGAAGCAATTGGAGGAGTCGACAGAGGCGATTCTTCAAGTTTCAGACGGAAGAATGTTGGGTGTTCGTTGTGGTTTGTATTG
TGGACTCAAAGAATACAAAAGAGGGCTGAATTTAAAAGGGGTTGGAAGAAATTTGCTCAATAACTTGCAACTTGGTGATGCTTGTGTTTTCGAGATGATAAGGAAAAACA
GTACGAAAATCTGTTTCAAA
Protein sequenceShow/hide protein sequence
MPNIRRSFAEKQLEESTEAILQVSDGRMLGVRCGLYCGLKEYKRGLNLKGVGRNLLNNLQLGDACVFEMIRKNSTKICFK