; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G030280 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G030280
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionupstream activation factor subunit UAF30-like
Genome locationCicolChr02:25711214..25714770
RNA-Seq ExpressionCcUC02G030280
SyntenyCcUC02G030280
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011165.1 UAF30 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1185.37Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRR+ICD++LKELFDVESF+GFTVSKLLATHF+KTK
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

XP_004148436.1 upstream activation factor subunit UAF30 [Cucumis sativus]1.7e-1190.24Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRRIICD+RLKELFDV+SFNGFTVSKLLATHFIK K
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

XP_008457882.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]1.7e-1190.24Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRRIICD+RLKELFDV+SFNGFTVSKLLATHFIK K
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

XP_022928098.1 upstream activation factor subunit UAF30-like [Cucurbita moschata]2.2e-1185.37Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRR+ICD++LKELFDVESF+GFTVSKLLATHF+KTK
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

XP_038901460.1 upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]1.3e-1190.24Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRRIICD+RLKELFDV+SF+GFTVSKLLATHFIKTK
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

TrEMBL top hitse value%identityAlignment
A0A0A0LJW7 Uncharacterized protein8.3e-1290.24Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRRIICD+RLKELFDV+SFNGFTVSKLLATHFIK K
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

A0A1S3C766 upstream activation factor subunit UAF30-like8.3e-1290.24Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRRIICD+RLKELFDV+SFNGFTVSKLLATHFIK K
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

A0A2N9FYE2 Uncharacterized protein1.8e-1175.51Show/hide
Query:  SLFWIPLVEKDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKT
        S F + L  KDPSDKRR++CD +LKELFDV+SFNGFTVSKLLA HFIKT
Subjt:  SLFWIPLVEKDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKT

A0A6J1EMX5 upstream activation factor subunit UAF30-like1.1e-1185.37Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRR+ICD++LKELFDVESF+GFTVSKLLATHF+KTK
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

A0A6J1I6I7 upstream activation factor subunit spp27-like2.4e-1182.93Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRR+ICD++LKELFDV+SF+GFTVSKLLATHF+KTK
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49520.1 SWIB complex BAF60b domain-containing protein3.9e-0661.11Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATH
        +DPSDKR IICD+ L+ LF VES N F ++K LA H
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATH

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.7e-0448.78Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGF-TVSKLLATHFIKT
        ++P+DKR I CD+ LK +F+ +   GF  +SKLL+ HF+KT
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGF-TVSKLLATHFIKT

AT3G19080.1 SWIB complex BAF60b domain-containing protein2.6e-1065.85Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK
        +DPSDKRR+ICD++LKELF+V+SF   +VSKLL  HFIK +
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK

AT4G22360.1 SWIB complex BAF60b domain-containing protein4.8e-0444.74Show/hide
Query:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFI
        +DPS+KR+IICD  L+ +F+ +  + F ++KLLA H +
Subjt:  KDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGATTGAAGGTGCCATCAAGTGGGTCTGTGATGTTGGTAGATGGCTTTGACCTATCTTGCATTGATTGTCATTATAGTATTAGAGCTGAAATCTTGAATTCAAA
TCTGTCTGTTTCTTCCGATATTAGTAGTCCGTATGTCGGAGTTGCTTGGTGGCAATCCTATCCCATTTCTTCATTGTTTTGGATTCCACTTGTTGAGAAGGACCCTTCTG
ACAAAAGGAGAATAATTTGTGACAAGAGGCTGAAAGAACTCTTCGATGTCGAATCCTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCACTCATTTTATAAAGACAAAA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGATTGAAGGTGCCATCAAGTGGGTCTGTGATGTTGGTAGATGGCTTTGACCTATCTTGCATTGATTGTCATTATAGTATTAGAGCTGAAATCTTGAATTCAAA
TCTGTCTGTTTCTTCCGATATTAGTAGTCCGTATGTCGGAGTTGCTTGGTGGCAATCCTATCCCATTTCTTCATTGTTTTGGATTCCACTTGTTGAGAAGGACCCTTCTG
ACAAAAGGAGAATAATTTGTGACAAGAGGCTGAAAGAACTCTTCGATGTCGAATCCTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCACTCATTTTATAAAGACAAAA
TAGACACAGGAGATGCAGAAGAATGTTAGGGTCATCAGTTGCTGAATCTAGATTCGGAATCTTGGGCTGGGACAATACATTACGTTTTTCTTGTTTTTTCTGTGTTAAAT
ATAATTGCTTGAGGAAAAGTAATAAGTTAAGTTTGTAGGTGTAACAATAATTCTTGTTTACAAGGATTATTCAACTCAAATTAATTTCAAGATTATTATTGTGCCTTTGA
ATCTATTTTGACGTCTTTCAAGCTTACTCCATCTAAGTTAGGAAAGAACGTGAAAGACACATTTTTCTCAATGTTGTGCTAAATGGAC
Protein sequenceShow/hide protein sequence
MRRLKVPSSGSVMLVDGFDLSCIDCHYSIRAEILNSNLSVSSDISSPYVGVAWWQSYPISSLFWIPLVEKDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK