; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G031480 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G031480
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranslation initiation factor IF-3
Genome locationCicolChr02:27221933..27226581
RNA-Seq ExpressionCcUC02G031480
SyntenyCcUC02G031480
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0032790 - ribosome disassembly (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR001288 - Translation initiation factor 3
IPR019813 - Translation initiation factor 3, conserved site
IPR019814 - Translation initiation factor 3, N-terminal
IPR019815 - Translation initiation factor 3, C-terminal
IPR036787 - Translation initiation factor 3 (IF-3), N-terminal domain superfamily
IPR036788 - Translation initiation factor 3 (IF-3), C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599141.1 Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.1e-12483.61Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGL+GRFPFK + SQSSA+ATAT TTS+++++SS+SATPFRTSI PLPL SSKSNAF+F LH SNSLRL     VSSPIRTSVFARYGGAPRSSGPA S
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        K S+D   LDV++IRSNNVRLID QQNMVGIV K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQKKSAATRMDLKELKMGY ID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV
        QHDYSVRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEP KKKDKP AVNEVSA V
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV

XP_004144726.1 translation initiation factor IF3-4, chloroplastic [Cucumis sativus]1.1e-13287.96Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAA-ATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD
        MAGL+G FPFK LLSQSSA+AT T+++SAA   TSS+S TPFRTS P LP+SSS SNAFKF LHKSNSLRL+FS PVSSPIRTSVFAR GGAPRSSGP D
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAA-ATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD

Query:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
        SKRS+DE GLD++AI+S NVRLIDA+QNMVG+VSKAQAIQMAEDAELDLVV+SPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
Subjt:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI

Query:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        DQHDYSVRL+AA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKDKPAVN VSA V
Subjt:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

XP_008452687.1 PREDICTED: translation initiation factor IF-3 [Cucumis melo]1.0e-13590.64Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSS-KSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD
        MAGL+G FPFK LLSQSSA+  +T T+ AAA TSS+S TPFRTS P LP+SSS  SNAFK  LHKSNSLRLVFSFPVSSPIRTSVFAR GGAPRSSGP D
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSS-KSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD

Query:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
        SKRS+DEFGLDV+AIRSNNVRLIDAQQNMVG+VSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
Subjt:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI

Query:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        DQHDYSVRL+AA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKDKPAVNEVSAGV
Subjt:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

XP_022158178.1 translation initiation factor IF3-4, chloroplastic [Momordica charantia]1.2e-13187.25Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGLT RFPFKPLLSQSSA+   T++ +A++++S+A+A PFRTSI PLPLSSS+SNAF F LH SNSLRL+    VSSPIR SVFAR+GGAPRSSGPADS
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        KRSDD+FGLDV+AIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        QHDYSVRL+AA++FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ+E+GELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKD PA+NEVSAGV
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

XP_038891171.1 translation initiation factor IF3-4, chloroplastic [Benincasa hispida]2.4e-14093.31Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGL+GRFPFKPLLSQS    T   TTSAAA TSS+SATPFRTSI PLPLSSSK+NAFKF L KSNSLRLV SFPVSSPIRTSVF+RYGGAPRSSGPADS
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        KRSDDEFGLDV+AIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQE-PSKKKDKPAVNEVSAGV
        QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEE+GELATEEAKNFRDRNIFIVLVPNKAVLQKAQE P KKKDKPAVNEVSAGV
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQE-PSKKKDKPAVNEVSAGV

TrEMBL top hitse value%identityAlignment
A0A0A0LH34 Translation initiation factor IF-35.2e-13387.96Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAA-ATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD
        MAGL+G FPFK LLSQSSA+AT T+++SAA   TSS+S TPFRTS P LP+SSS SNAFKF LHKSNSLRL+FS PVSSPIRTSVFAR GGAPRSSGP D
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAA-ATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD

Query:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
        SKRS+DE GLD++AI+S NVRLIDA+QNMVG+VSKAQAIQMAEDAELDLVV+SPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
Subjt:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI

Query:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        DQHDYSVRL+AA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKDKPAVN VSA V
Subjt:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

A0A1S3BV82 Translation initiation factor IF-35.0e-13690.64Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSS-KSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD
        MAGL+G FPFK LLSQSSA+  +T T+ AAA TSS+S TPFRTS P LP+SSS  SNAFK  LHKSNSLRLVFSFPVSSPIRTSVFAR GGAPRSSGP D
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSS-KSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPAD

Query:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
        SKRS+DEFGLDV+AIRSNNVRLIDAQQNMVG+VSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI
Subjt:  SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNI

Query:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        DQHDYSVRL+AA+KFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKDKPAVNEVSAGV
Subjt:  DQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

A0A6J1DYM5 Translation initiation factor IF-35.7e-13287.25Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGLT RFPFKPLLSQSSA+   T++ +A++++S+A+A PFRTSI PLPLSSS+SNAF F LH SNSLRL+    VSSPIR SVFAR+GGAPRSSGPADS
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        KRSDD+FGLDV+AIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV
        QHDYSVRL+AA++FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ+E+GELATEEAKNFRDRNIFIVLVPNKAVLQKAQEP KKKD PA+NEVSAGV
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV

A0A6J1G3Y5 Translation initiation factor IF-32.8e-12383.95Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGL+GRFPFK + SQSSA+ATAT TTS     SS+SATPFRTSI PLPL SSKSNAF+F LH SNSLRL     VSSPIRTSVFARYGGAPRSSGPA S
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        KRS+D   LDV++IRSNNVRLID QQNMVGIV K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQKKSAATRMDLKELKMGY ID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV
        QHDYSVRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEP KKKDKP AVNEVSA V
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV

A0A6J1KDY9 Translation initiation factor IF-31.6e-12182.61Show/hide
Query:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS
        MAGL+GRFPFK + SQSSA+ATAT       T+SS+SATPFRTSI PLP  SSKSNA +F LH SNSLRL     VSSPIRTSVFARYGGAPRSSGP  S
Subjt:  MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADS

Query:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID
        KRS+D   LDV++IRSNNVRLID QQNMVGIV K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQKKSAATRMDLKELKMGY ID
Subjt:  KRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNID

Query:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV
        QHDYSVRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEP KKKDKP AVNEVSAGV
Subjt:  QHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKP-AVNEVSAGV

SwissProt top hitse value%identityAlignment
B0JKQ1 Translation initiation factor IF-31.9e-3142.05Show/hide
Query:  DSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYN
        D +R+  +       IR   +R+ID+  + +GI++ A+A+++AE+ ELDLV++S  A PPV RIMDY KY++E +KK R  +KK      D+KE+KM Y 
Subjt:  DSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYN

Query:  IDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK
        ID+HDY+VR+  AQ+FLK GDKVK  +  +GRE +  N+A EL+ R  +++ ++A  ++A     RN+ ++L P K
Subjt:  IDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK

O82234 Translation initiation factor IF3-2, chloroplastic2.1e-7569.41Show/hide
Query:  TSVFARYGGAPRSSGP---ADSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRG
        T  F   GG  R SG       K ++ +  LD+++IRS  VRLID QQNM+G+VSK +A++MA+DAELDLV+LSPDADPPVV++MDY+KYRYE QK+K+ 
Subjt:  TSVFARYGGAPRSSGP---ADSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRG

Query:  QQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQK
        QQKK+  TRMDLKELKMGYNIDQHDYSVRLRAAQKFL+DGDKVKVIV++KGRENEFRNIAIEL+RRFQ E+GELATEE+KNFRDRN+FI+LVPNK +++K
Subjt:  QQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQK

Query:  AQE-PSKKKDKPAVNEVSA
         QE P++KK K A NE SA
Subjt:  AQE-PSKKKDKPAVNEVSA

Q8R9C2 Translation initiation factor IF-31.2e-3043.48Show/hide
Query:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQK
        IR   VRLID     +GI+S  +A ++A++  LDLV + P+A+PPV ++MD+ KYRYEL K+++  +KK     +++KE++M  NI+ HD+ V+L++A K
Subjt:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQK

Query:  FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK
        FLKDGDKVKV +  +GRE    ++A +L++RF EE+ E    E+A +   RN+ +V+ P K
Subjt:  FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELA-TEEAKNFRDRNIFIVLVPNK

Q8YNE3 Translation initiation factor IF-32.7e-3044.79Show/hide
Query:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQK
        IR   +R+ID   + +GI++  +A+Q+AE+ ELDLV+LS  ADPPV RIMDY KY++E +KK R  +KK      D+KE+KM Y I++HDY+VR++ A++
Subjt:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQK

Query:  FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ---EEVGELATEEAKNFRDRNIFIVLVPNK
        FLKDGDKVK  V  +GRE +  ++A +L++R     E  GE+  ++A     RN+ +++ P K
Subjt:  FLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ---EEVGELATEEAKNFRDRNIFIVLVPNK

Q94B52 Translation initiation factor IF3-4, chloroplastic1.0e-7771.04Show/hide
Query:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK
        ++  RY  GG   S  P D     K S+D+  LD++AIRS  VRLID QQNM+G+VSK +A++ AEDAELDLV+LSPDADPPVVR+MDY+KYRYE QK+K
Subjt:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK

Query:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL
        + QQKK+  TRMDLKELKMGYNIDQHDYSVR+RAA+KFL+DGDKVKVIVN+KGRENEFRNIAIEL+RRFQ E+GEL TEE+KNFRDRN+FIVLVPNK V+
Subjt:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL

Query:  QKAQE-PSKKKDKPAVNEVSA
        +K QE P KKK KPA ++VSA
Subjt:  QKAQE-PSKKKDKPAVNEVSA

Arabidopsis top hitse value%identityAlignment
AT1G34360.1 translation initiation factor 3 (IF-3) family protein3.9e-0831.06Show/hide
Query:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQK--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAA
        I  + VRL+  + + V  VS  +A++ A++ + DLV +  DA PPV +I+ Y+   Y+  K  K+R + K++ A R D+KE++    I+  D   +   A
Subjt:  IRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQK--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAA

Query:  QKFLKDGDKVKVI-VNLKGRENEFR-NIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLV
         K ++ G +VK + V  K +  E      +EL+ RF   +G+ A  E+    DR   +V+V
Subjt:  QKFLKDGDKVKVI-VNLKGRENEFR-NIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLV

AT2G24060.1 Translation initiation factor 3 protein1.5e-7669.41Show/hide
Query:  TSVFARYGGAPRSSGP---ADSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRG
        T  F   GG  R SG       K ++ +  LD+++IRS  VRLID QQNM+G+VSK +A++MA+DAELDLV+LSPDADPPVV++MDY+KYRYE QK+K+ 
Subjt:  TSVFARYGGAPRSSGP---ADSKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRG

Query:  QQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQK
        QQKK+  TRMDLKELKMGYNIDQHDYSVRLRAAQKFL+DGDKVKVIV++KGRENEFRNIAIEL+RRFQ E+GELATEE+KNFRDRN+FI+LVPNK +++K
Subjt:  QQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQK

Query:  AQE-PSKKKDKPAVNEVSA
         QE P++KK K A NE SA
Subjt:  AQE-PSKKKDKPAVNEVSA

AT4G30690.1 Translation initiation factor 3 protein7.2e-7971.04Show/hide
Query:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK
        ++  RY  GG   S  P D     K S+D+  LD++AIRS  VRLID QQNM+G+VSK +A++ AEDAELDLV+LSPDADPPVVR+MDY+KYRYE QK+K
Subjt:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK

Query:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL
        + QQKK+  TRMDLKELKMGYNIDQHDYSVR+RAA+KFL+DGDKVKVIVN+KGRENEFRNIAIEL+RRFQ E+GEL TEE+KNFRDRN+FIVLVPNK V+
Subjt:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL

Query:  QKAQE-PSKKKDKPAVNEVSA
        +K QE P KKK KPA ++VSA
Subjt:  QKAQE-PSKKKDKPAVNEVSA

AT4G30690.2 Translation initiation factor 3 protein9.5e-6360.63Show/hide
Query:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK
        ++  RY  GG   S  P D     K S+D+  LD++AIRS  VRLID QQNM+G+VSK +A++ AEDAELDLV+LSPDADPPVVR+MDY+          
Subjt:  SVFARY--GGAPRSSGPAD----SKRSDDEFGLDVNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKK

Query:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL
                            YNIDQHDYSVR+RAA+KFL+DGDKVKVIVN+KGRENEFRNIAIEL+RRFQ E+GEL TEE+KNFRDRN+FIVLVPNK V+
Subjt:  RGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVL

Query:  QKAQE-PSKKKDKPAVNEVSA
        +K QE P KKK KPA ++VSA
Subjt:  QKAQE-PSKKKDKPAVNEVSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGGCTCACCGGCAGATTCCCTTTCAAACCTCTCTTATCCCAATCCTCCGCCTCCGCCACCGCCACCGCCACCACCTCCGCCGCCGCCACAACTTCCTCCGCCTC
CGCTACTCCCTTCCGAACCTCAATTCCCCCTCTACCCCTCTCCTCTTCTAAATCCAATGCCTTCAAATTCCACCTTCACAAATCCAACTCTCTGCGTCTCGTCTTCTCCT
TTCCCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCTGATTCTAAGCGCTCTGACGATGAATTTGGTCTTGAT
GTTAACGCCATCAGGTCGAATAATGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCCCAGGCCATTCAAATGGCTGAAGACGCTGAACTTGA
TTTGGTTGTATTATCCCCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAATAAATATAGGTATGAACTGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTG
CTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTATAACATCGACCAACATGATTACTCTGTCCGTTTGAGAGCTGCACAAAAGTTTTTGAAAGATGGAGACAAG
GTTAAAGTTATAGTGAACCTGAAAGGTCGTGAAAATGAGTTCAGAAACATAGCAATTGAGCTCATCAGACGTTTCCAGGAAGAAGTTGGAGAGCTTGCAACTGAAGAGGC
CAAAAACTTCAGAGACAGGAATATATTTATTGTTCTAGTTCCTAACAAGGCTGTTCTACAAAAGGCTCAAGAACCCTCTAAGAAAAAGGATAAACCTGCAGTTAATGAAG
TTTCTGCTGGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGGCTCACCGGCAGATTCCCTTTCAAACCTCTCTTATCCCAATCCTCCGCCTCCGCCACCGCCACCGCCACCACCTCCGCCGCCGCCACAACTTCCTCCGCCTC
CGCTACTCCCTTCCGAACCTCAATTCCCCCTCTACCCCTCTCCTCTTCTAAATCCAATGCCTTCAAATTCCACCTTCACAAATCCAACTCTCTGCGTCTCGTCTTCTCCT
TTCCCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCTGATTCTAAGCGCTCTGACGATGAATTTGGTCTTGAT
GTTAACGCCATCAGGTCGAATAATGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCCCAGGCCATTCAAATGGCTGAAGACGCTGAACTTGA
TTTGGTTGTATTATCCCCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAATAAATATAGGTATGAACTGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTG
CTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTATAACATCGACCAACATGATTACTCTGTCCGTTTGAGAGCTGCACAAAAGTTTTTGAAAGATGGAGACAAG
GTTAAAGTTATAGTGAACCTGAAAGGTCGTGAAAATGAGTTCAGAAACATAGCAATTGAGCTCATCAGACGTTTCCAGGAAGAAGTTGGAGAGCTTGCAACTGAAGAGGC
CAAAAACTTCAGAGACAGGAATATATTTATTGTTCTAGTTCCTAACAAGGCTGTTCTACAAAAGGCTCAAGAACCCTCTAAGAAAAAGGATAAACCTGCAGTTAATGAAG
TTTCTGCTGGTGTTTAA
Protein sequenceShow/hide protein sequence
MAGLTGRFPFKPLLSQSSASATATATTSAAATTSSASATPFRTSIPPLPLSSSKSNAFKFHLHKSNSLRLVFSFPVSSPIRTSVFARYGGAPRSSGPADSKRSDDEFGLD
VNAIRSNNVRLIDAQQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDK
VKVIVNLKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPSKKKDKPAVNEVSAGV