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CcUC02G031680 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G031680
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptiontRNA-specific 2-thiouridylase
Genome locationCicolChr02:27441683..27442323
RNA-Seq ExpressionCcUC02G031680
SyntenyCcUC02G031680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056096.1 hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa]3.6e-3580.91Show/hide
Query:  MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFST
        MG+LEIAGIGGRRW+ +YEKL S G   NRVV    R RRW+KK+LKRGMKGFRLYR TRLR SFGLKVSFL+ LSRRIREIVNRMK VEDVCPNIIFST
Subjt:  MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFST

Query:  QWGLPVLSYI
        QWGLPVLSYI
Subjt:  QWGLPVLSYI

KAE9446725.1 hypothetical protein C3L33_21367, partial [Rhododendron williamsianum]1.1e-0740.95Show/hide
Query:  LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGL
        +EI+ + G RW   YEKL    +     RP RRW  K+  R    FR  RL R R    +   +++  +RI     EI+NRMK+++D+CP I+FS  WGL
Subjt:  LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGL

Query:  PVLSY
        PVLS+
Subjt:  PVLSY

KAG6599155.1 Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3278.43Show/hide
Query:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVL
        MG+LE AGIGGRRW+ YEKL+   N VVK R RRWMKK LKRG KGFRLYRLTR RSF LKVSFL+L+SRRIREIVNRMK VEDVC N+IF TQWGLP L
Subjt:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVL

Query:  SY
        SY
Subjt:  SY

KGN61039.1 hypothetical protein Csa_021124 [Cucumis sativus]1.4e-3683.02Show/hide
Query:  MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGL
        M +LEIAGIGGRRW+ +YEKL SGG NRVV  R RRW+KK+LKRGMKGFRLYR TRL+ SFGLKVSFL+ LSRRIREIV+RMKVVEDVCPNIIFSTQWGL
Subjt:  MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGL

Query:  PVLSYI
        PVLSYI
Subjt:  PVLSYI

OAY43889.1 hypothetical protein MANES_08G105911v8 [Manihot esculenta]1.1e-0745.63Show/hide
Query:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPV
        MG+ +I G+  R    YEKL S   ++ K R R W+KK L  G+KG RL R  +L    L V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPV
Subjt:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPV

Query:  LSY
        LS+
Subjt:  LSY

TrEMBL top hitse value%identityAlignment
A0A0A0LJ29 Uncharacterized protein7.0e-3783.02Show/hide
Query:  MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGL
        M +LEIAGIGGRRW+ +YEKL SGG NRVV  R RRW+KK+LKRGMKGFRLYR TRL+ SFGLKVSFL+ LSRRIREIV+RMKVVEDVCPNIIFSTQWGL
Subjt:  MGVLEIAGIGGRRWD-YYEKLYSGG-NRVVKRRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGL

Query:  PVLSYI
        PVLSYI
Subjt:  PVLSYI

A0A1U7YA37 uncharacterized protein LOC1042427302.6e-0746.15Show/hide
Query:  YEKLYSGGNRVVKRRPRR-WMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRI----REIVNRMKVVEDVCPNIIFSTQWGLPVLSY
        YE+L    +  V  RPRR W+ K +    KG    +L+R R    K   +++L RRI    REIV RMK +EDVCP I+FS  WGLPVLS+
Subjt:  YEKLYSGGNRVVKRRPRR-WMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRI----REIVNRMKVVEDVCPNIIFSTQWGLPVLSY

A0A2C9VF51 Uncharacterized protein5.2e-0845.63Show/hide
Query:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPV
        MG+ +I G+  R    YEKL S   ++ K R R W+KK L  G+KG RL R  +L    L V  L   ++R   +I++R+K +ED+ PNIIFSTQ GLPV
Subjt:  MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFL-ILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPV

Query:  LSY
        LS+
Subjt:  LSY

A0A5D3BCS3 Uncharacterized protein1.7e-3580.91Show/hide
Query:  MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFST
        MG+LEIAGIGGRRW+ +YEKL S G   NRVV    R RRW+KK+LKRGMKGFRLYR TRLR SFGLKVSFL+ LSRRIREIVNRMK VEDVCPNIIFST
Subjt:  MGVLEIAGIGGRRWD-YYEKLYSGG---NRVVK--RRPRRWMKKILKRGMKGFRLYRLTRLR-SFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFST

Query:  QWGLPVLSYI
        QWGLPVLSYI
Subjt:  QWGLPVLSYI

A0A6A4KLK9 SHSP domain-containing protein (Fragment)5.2e-0840.95Show/hide
Query:  LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGL
        +EI+ + G RW   YEKL    +     RP RRW  K+  R    FR  RL R R    +   +++  +RI     EI+NRMK+++D+CP I+FS  WGL
Subjt:  LEIAGIGGRRWDY-YEKLYSGGNRVVKRRP-RRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIR----EIVNRMKVVEDVCPNIIFSTQWGL

Query:  PVLSY
        PVLS+
Subjt:  PVLSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTTCTGGAGATTGCTGGCATTGGAGGACGTCGATGGGATTACTATGAGAAGCTGTATAGTGGAGGAAATAGGGTGGTTAAGCGTAGACCACGTCGATGGATGAA
AAAAATATTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGACTTACAAGGTTGAGGAGTTTTGGTTTAAAGGTATCATTTTTAATCTTATTGTCAAGAAGAATTAGGG
AGATTGTCAATAGAATGAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTTTATCTTATATATAA
mRNA sequenceShow/hide mRNA sequence
CATAGGGGAGCCTCACCCATAACTCTATAAATTTGTGCAATCTTCTCTGTGTGTTTCAAACTTGGATATCCGCAACGGGTTCACAAACAGAGTACTAATTTTCTTTTGTT
GCCAATTCCTTTGAGTTTAGCTCAACTGGTTTTAAGCATATACTTTCAACGTAAGAGGTTAAAGGTTTGATTCATGATCTATAACGTCAGGCAAATGGGTGTTCTGGAGA
TTGCTGGCATTGGAGGACGTCGATGGGATTACTATGAGAAGCTGTATAGTGGAGGAAATAGGGTGGTTAAGCGTAGACCACGTCGATGGATGAAAAAAATATTAAAGAGA
GGAATGAAGGGTTTTCGATTGTATCGACTTACAAGGTTGAGGAGTTTTGGTTTAAAGGTATCATTTTTAATCTTATTGTCAAGAAGAATTAGGGAGATTGTCAATAGAAT
GAAGGTTGTTGAAGATGTATGTCCTAATATCATCTTCTCTACTCAATGGGGACTTCCTGTTTTATCTTATATATAATTCCTCTTCCAAGTTGTTTGTTGCTTTGACTCAT
GTTTTTATTAATGGCTGGATTATTCATGTAACTTTTGGTTATATATGTAATGTATAAAATGGAATATTACAGGACTGTGTTTACTTCTTTC
Protein sequenceShow/hide protein sequence
MGVLEIAGIGGRRWDYYEKLYSGGNRVVKRRPRRWMKKILKRGMKGFRLYRLTRLRSFGLKVSFLILLSRRIREIVNRMKVVEDVCPNIIFSTQWGLPVLSYI