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CcUC02G034170 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G034170
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionVQ domain-containing protein
Genome locationCicolChr02:29920673..29921086
RNA-Seq ExpressionCcUC02G034170
SyntenyCcUC02G034170
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]6.6e-3765.52Show/hide
Query:  MENL-KSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQQFNQVFY--PPTSTLAVASFDPK
        MENL  +LP +  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   DA F QS+Q FN  FY  PP+S+    SFDP+
Subjt:  MENL-KSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQQFNQVFY--PPTSTLAVASFDPK

Query:  DYYAFSSTGHVFDP--TGVAEGHYWRGEMEGSFSGFQASSCVNIW
        D Y  +S   +FD       EG YWRGEMEGSFSGFQASSCVNIW
Subjt:  DYYAFSSTGHVFDP--TGVAEGHYWRGEMEGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]6.0e-3869.01Show/hide
Query:  MENLKSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFY-PPTSTLAVASFDPKDYYA
        MEN  +LP+N  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   D   QS+Q FN VFY PP S+    SFDPKD Y 
Subjt:  MENLKSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFY-PPTSTLAVASFDPKDYYA

Query:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW
         S++G V FD      EG YWRGEME GSFSGFQASSCVNIW
Subjt:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2558.39Show/hide
Query:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS
        MENLKSLPN+  H+K+     + T+  NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS+ DDAF +S Q+FN  F PP+ST  V SFD KD Y   
Subjt:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
        S+   +DP  V       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]1.1e-2659.85Show/hide
Query:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS
        MENLKSLPN+  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS+ DDAF +S Q+FN  F PP+ST  V SFD KD Y   
Subjt:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
        S+   +DP GV       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]2.8e-3573.45Show/hide
Query:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWRGEMEGS
        +DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQH SP DAF QS + FNQVFYPP S++A  SFDPKD YA +S   +FD         W+GEMEGS
Subjt:  IDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWRGEMEGS

Query:  FSGFQASSCVNIW
        FSGFQASSCVN W
Subjt:  FSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein2.9e-3869.01Show/hide
Query:  MENLKSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFY-PPTSTLAVASFDPKDYYA
        MEN  +LP+N  H+K++Q+ NK TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   D   QS+Q FN VFY PP S+    SFDPKD Y 
Subjt:  MENLKSLPNNPDHQKITQIPNKPTID-QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFY-PPTSTLAVASFDPKDYYA

Query:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW
         S++G V FD      EG YWRGEME GSFSGFQASSCVNIW
Subjt:  FSSTGHV-FDPTGVA-EGHYWRGEME-GSFSGFQASSCVNIW

A0A5A7VDH6 VQ motif-containing protein3.2e-3765.52Show/hide
Query:  MENL-KSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQQFNQVFY--PPTSTLAVASFDPK
        MENL  +LP +  H+K++Q  NKPT    QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS   DA F QS+Q FN  FY  PP+S+    SFDP+
Subjt:  MENL-KSLPNNPDHQKITQIPNKPTI--DQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDA-FHQSLQQFNQVFY--PPTSTLAVASFDPK

Query:  DYYAFSSTGHVFDP--TGVAEGHYWRGEMEGSFSGFQASSCVNIW
        D Y  +S   +FD       EG YWRGEMEGSFSGFQASSCVNIW
Subjt:  DYYAFSSTGHVFDP--TGVAEGHYWRGEMEGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like9.7e-1857.52Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWRGEMEGS
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ +SPDDAF        ++ N  FYPP  + AV S DPK YY   S G V +   + EG + + EM+G 
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSL----QQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWRGEMEGS

Query:  FSGFQASSCVNIW
        FSGFQA SCVN +
Subjt:  FSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like5.1e-2759.85Show/hide
Query:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS
        MENLKSLPN+  H+K+     + T+  NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS+ DDAF +S Q+FN  F PP+ST  V SFD KD Y   
Subjt:  MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFS

Query:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW
        S+   +DP GV       GEM+ S  GFQA S V++W
Subjt:  STGHVFDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW

W9RT96 VQ domain-containing protein4.8e-0938.96Show/hide
Query:  NNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQQFNQVF----------------YPPTSTLA
        NNP H +  + P+K    + KPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S+     DD  H +SL +   +F                Y P  +  
Subjt:  NNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSS----PDDAFH-QSLQQFNQVF----------------YPPTSTLA

Query:  VASFDPKDYYAFSSTGHVFDPTGVA-------EGHYWRGEMEGSFSGFQASSCV
         A  D +D+      G  F    V+        G +WR E+  SF+GFQ SSC+
Subjt:  VASFDPKDYYAFSSTGHVFDPTGVA-------EGHYWRGEMEGSFSGFQASSCV

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.4e-0533.9Show/hide
Query:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWR
        K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S    N    PP   LA      + +    S    ++P   AE  +  
Subjt:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWR

Query:  GEMEGSFSGFQASSCVNI
         +M   FSGF ++   N+
Subjt:  GEMEGSFSGFQASSCVNI

Arabidopsis top hitse value%identityAlignment
AT3G56710.1 sigma factor binding protein 11.7e-0633.9Show/hide
Query:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWR
        K T   NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ +    P+  +  S    N    PP   LA      + +    S    ++P   AE  +  
Subjt:  KPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS---SPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHVFDPTGVAEGHYWR

Query:  GEMEGSFSGFQASSCVNI
         +M   FSGF ++   N+
Subjt:  GEMEGSFSGFQASSCVNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTTAAAAGCCTTCCTAATAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTAC
ATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAA
TCACTTCAACAGTTTAACCAAGTTTTTTATCCCCCGACGTCGACCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTACTATGCTTTTTCGTCCACCGGTCATGTC
TTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTTAAAAGCCTTCCTAATAATCCTGATCACCAAAAAATTACCCAAATTCCCAACAAACCAACAATTGATCAAAACAAGCCTATCAAAGTGAAGTAC
ATTTCTAGTCCCATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCCTCCCCTGATGATGCTTTTCATCAA
TCACTTCAACAGTTTAACCAAGTTTTTTATCCCCCGACGTCGACCCTGGCCGTGGCTTCTTTCGACCCTAAGGATTACTATGCTTTTTCGTCCACCGGTCATGTC
TTTGATCCAACCGGAGTCGCCGAAGGCCATTATTGGCGAGGTGAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA
Protein sequenceShow/hide protein sequence
MENLKSLPNNPDHQKITQIPNKPTIDQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSSPDDAFHQSLQQFNQVFYPPTSTLAVASFDPKDYYAFSSTGHV
FDPTGVAEGHYWRGEMEGSFSGFQASSCVNIW