; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G036120 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G036120
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L20
Genome locationCicolChr02:31959180..31962942
RNA-Seq ExpressionCcUC02G036120
SyntenyCcUC02G036120
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005813 - Ribosomal protein L20
IPR035566 - Ribosomal protein L20, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]6.4e-6398.4Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DAASMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]3.7e-6399.2Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DAASMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]1.1e-6298.4Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DA SMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]1.4e-6297.6Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DA SM+V
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

XP_038901625.1 50S ribosomal protein L20 [Benincasa hispida]2.4e-6297.6Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DAASMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

TrEMBL top hitse value%identityAlignment
A0A0A0KD68 50S ribosomal protein L203.1e-6398.4Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DAASMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

A0A1S4E159 50S ribosomal protein L201.8e-6399.2Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DAASMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

A0A6J1FUI3 50S ribosomal protein L205.3e-6398.4Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DA SMIV
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

A0A6J1JCG1 50S ribosomal protein L206.9e-6397.6Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+DA SM+V
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

A0A6J1KY75 50S ribosomal protein L204.9e-6193.6Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKRDAASMIV
        ISRNAFPGNKNVVFPPK+D  S+++
Subjt:  ISRNAFPGNKNVVFPPKRDAASMIV

SwissProt top hitse value%identityAlignment
B6IPJ8 50S ribosomal protein L207.9e-3263.37Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q11KK1 50S ribosomal protein L202.4e-2856.07Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  AFPGNKN
        +    KN
Subjt:  AFPGNKN

Q2GHR2 50S ribosomal protein L201.1e-2860.4Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L202.2e-2960.4Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L202.4e-2856.44Show/hide
Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hitse value%identityAlignment
AT1G16740.1 Ribosomal protein L208.9e-5589.38Show/hide
Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVV
        +SR +FPGNKNVV
Subjt:  ISRNAFPGNKNVV

ATCG00660.1 ribosomal protein L201.1e-0938.2Show/hide
Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCG
GGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTACGGCAATTTTATGCATGGGCTGATGA
AGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCCAAGAGGGATGCTGCCTCCATGATTGTTTAA
mRNA sequenceShow/hide mRNA sequence
CTTTGGGGAAGAAGGGAAACCTAAACTCCTTCCGCTCACTCTCACGTGCTCCACTTCACGCCGTCTCCTGCCCCCTTTCAAAAGCTCCGTGTCGCCGCCGTCTCTCTCCC
GTTCAATTCAGCCCCCGCTGTCTGTCTTCCGCTCGCACTGCCGAAACCATCCTCCCATCAGCTGTAGATCATAGCAAGGAAAAAAGATGAACAAGGACAAGATATTTAAG
CTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGA
CATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTACGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAA
AAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAGG
GATGCTGCCTCCATGATTGTTTAATGGATCGTTTACGAGTCCTCTAGATCTCCAGTTATATAGAAACAGACTAGGGATGTTTGTCTGGCTTATGATGAGAGTTGATGGTT
GTTGTTGAGCGTAATTCTTTTCATTTCTATTGTTGCGTTAATTCTCCAAATGTTGTCAGACACTGAAAGGCTTGTCCATTTGAAATGATAAAAGTTTCTTGGATGCTTTG
Protein sequenceShow/hide protein sequence
MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK
NVVFPPKRDAASMIV