; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC02G039320 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G039320
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationCicolChr02:34648304..34648999
RNA-Seq ExpressionCcUC02G039320
SyntenyCcUC02G039320
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]9.9e-9481.58Show/hide
Query:  MSTSRRSPPSNASPG--TLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFA
        MST  RS PSNASP   TLTLTLTQPNN TDQLHFTDEDE+NLL  YLQI+RSENPTKNS PTLDSP  DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTSRRSPPSNASPG--TLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLND
        RTKSFIKTPH RQIL+LGR IWGKSPTPITRKPQVISPSR LSRRIKQRS    +RKE     +DLKN+PVLV EFS+ FPGNGVWREGLR MEEK+L D
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLND

Query:  MNEKWVLLHIEGAELKARRASLLKQQLR
        MNEKWVLLHIEGAELKARRA+LLKQQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLR

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]9.3e-7671.11Show/hide
Query:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART
        MST  R PPSNASP TLT             HF++EDELNLLN YLQIARS NPT NSQPTLDSP LDRI+TAL PKFT+SHIADKLHRLKL YHK ART
Subjt:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART

Query:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWV
        KS IKTPHHR+ILE+GR IWGK PT  T KPQ I   RA+ RRIKQRS    S K+ VDL ++PVL+ EFSR FPGNGVW+EGLR MEEKSL DMNEKWV
Subjt:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWV

Query:  LLHIEGAELKARRASLLKQQLRITE
        LLHIE AELKARRA+LL++QLR+ +
Subjt:  LLHIEGAELKARRASLLKQQLRITE

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]1.1e-6865.8Show/hide
Query:  MSTSRRSPPS---NASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKF
        MST RRSPPS    AS       LTQ      Q+HFTDEDEL+LLN YL++A S    KNSQPTLDSP LDRI TALG KF HSHIADKLHRLK+ YHKF
Subjt:  MSTSRRSPPS---NASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKF

Query:  ARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNE
        ARTKSFIKTPHH +ILE+GR IWGK   P T KPQVI      SRRI+ RS+   ++K+ VDLKN+PVLV EFSR FPGNGVWREGL+ MEE SL  MNE
Subjt:  ARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNE

Query:  KWVLLHIEGAELKARRASLLKQQLRITETSE
        KWVLLHIE AELKARR +L+++Q+  T+T +
Subjt:  KWVLLHIEGAELKARRASLLKQQLRITETSE

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]7.6e-9479.15Show/hide
Query:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART
        MST  RSPPS+ASP     TLTQ NN  DQLHF DEDE+NLLN YLQI+RSENPTKNS PTLDS   DR+QTA+GPKF+HS IADKLHRLKLLYHKFART
Subjt:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART

Query:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMN
        KSFIKTPH RQIL+LGR IWGKSPTP+TRKPQVISPSR LSRRIKQRSI   +RKE     VDLKN+PVLV EFSR FPGNGVWR+GLR M EK+L DMN
Subjt:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMN

Query:  EKWVLLHIEGAELKARRASLLKQQLRITETSEDVN
        EKWVLLHIEGAELKARRA+LLK+QLR TET+EDVN
Subjt:  EKWVLLHIEGAELKARRASLLKQQLRITETSEDVN

XP_006424433.1 probable transcription factor At1g11510 [Citrus clementina]6.3e-3237.67Show/hide
Query:  TLTLTQPNNPTDQLHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKSFIKTPHHRQI
        T  ++ P +P  ++ FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL++ YHK AR+KS IKTPH + +
Subjt:  TLTLTQPNNPTDQLHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKSFIKTPHHRQI

Query:  LELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWVLLHIEGAE
         ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++    L +MN+KW+L+ IE A+
Subjt:  LELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWVLLHIEGAE

Query:  LKARRASLLKQQLRI
        + +++A L+K+Q ++
Subjt:  LKARRASLLKQQLRI

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein3.7e-9479.15Show/hide
Query:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART
        MST  RSPPS+ASP     TLTQ NN  DQLHF DEDE+NLLN YLQI+RSENPTKNS PTLDS   DR+QTA+GPKF+HS IADKLHRLKLLYHKFART
Subjt:  MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFART

Query:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMN
        KSFIKTPH RQIL+LGR IWGKSPTP+TRKPQVISPSR LSRRIKQRSI   +RKE     VDLKN+PVLV EFSR FPGNGVWR+GLR M EK+L DMN
Subjt:  KSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMN

Query:  EKWVLLHIEGAELKARRASLLKQQLRITETSEDVN
        EKWVLLHIEGAELKARRA+LLK+QLR TET+EDVN
Subjt:  EKWVLLHIEGAELKARRASLLKQQLRITETSEDVN

A0A2H5MZL8 Uncharacterized protein3.4e-3136.89Show/hide
Query:  NASPGTLTLTLTQP-NNPTDQ--LHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKS
        +++P       T P ++PT Q    FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL++ YHK AR+KS
Subjt:  NASPGTLTLTLTQP-NNPTDQ--LHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKS

Query:  FIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEK
         +KTPH + + ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++    L +MN+K
Subjt:  FIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEK

Query:  WVLLHIEGAELKARRASLLKQQLRI
        W+L+ IE A++ +++A L+K+Q ++
Subjt:  WVLLHIEGAELKARRASLLKQQLRI

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like4.8e-9481.58Show/hide
Query:  MSTSRRSPPSNASPG--TLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFA
        MST  RS PSNASP   TLTLTLTQPNN TDQLHFTDEDE+NLL  YLQI+RSENPTKNS PTLDSP  DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTSRRSPPSNASPG--TLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLND
        RTKSFIKTPH RQIL+LGR IWGKSPTPITRKPQVISPSR LSRRIKQRS    +RKE     +DLKN+PVLV EFS+ FPGNGVWREGLR MEEK+L D
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLND

Query:  MNEKWVLLHIEGAELKARRASLLKQQLR
        MNEKWVLLHIEGAELKARRA+LLKQQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLR

A0A6P3Z773 probable transcription factor At1g617308.3e-3038.98Show/hide
Query:  STSRRSPPSNASPGTLTLTLTQPN----NPTDQLH----------FTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKL
        S+S+R+ PS+ SP T T T  QP+    +P +Q            FT+EDE +LL  +  I +S  P+      ++SP LDRI+ +LG +F+H+ I DKL
Subjt:  STSRRSPPSNASPGTLTLTLTQPN----NPTDQLH----------FTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKL

Query:  HRLKLLYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAM
         RL+L YHK ARTKS IKT H R++ ++ R IWG+            S SR   +  +++      R   V L+ +PVL  E   +  GN VW++GL  +
Subjt:  HRLKLLYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAM

Query:  EEKSLNDMNEKWVLLHIEGAELKARRASLLKQQLRI
        EEK+L  +NEKW+LL +E AE+ A RA L K+ + +
Subjt:  EEKSLNDMNEKWVLLHIEGAELKARRASLLKQQLRI

V4RSW9 Uncharacterized protein3.1e-3237.67Show/hide
Query:  TLTLTQPNNPTDQLHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKSFIKTPHHRQI
        T  ++ P +P  ++ FTD DE+ LL  + ++A      S + T NS  TLDS + +RI ++LG KFTH+ I DK+ RL++ YHK AR+KS IKTPH + +
Subjt:  TLTLTQPNNPTDQLHFTDEDELNLLNYYLQIAR-----SENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKSFIKTPHHRQI

Query:  LELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWVLLHIEGAE
         ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++    L +MN+KW+L+ IE A+
Subjt:  LELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWVLLHIEGAE

Query:  LKARRASLLKQQLRI
        + +++A L+K+Q ++
Subjt:  LKARRASLLKQQLRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGTCCCGCCGGTCACCGCCGTCCAACGCCTCTCCCGGAACCCTAACCCTAACCCTAACCCAACCCAACAATCCAACCGATCAACTCCATTTCACCGAC
GAAGATGAACTCAATCTCCTGAATTACTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAACCCACTCTCGATTCTCCGACCTTGGACCGCATC
CAGACCGCTCTCGGCCCCAAATTCACCCACTCCCACATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACCAAGTCTTTCATCAAG
ACTCCCCACCACCGTCAGATCCTCGAGCTCGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCACGAGCACTT
TCACGAAGAATCAAACAAAGGTCAATCTCAAGACTCTCAAGGAAAGAAAAGGTTGATCTGAAGAACTATCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCG
GGCAATGGGGTGTGGAGAGAAGGGCTGAGGGCAATGGAAGAGAAGAGTTTGAATGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAG
GCAAGAAGGGCTTCATTATTAAAGCAGCAACTTAGAATTACAGAGACTTCTGAAGATGTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAACGTCCCGCCGGTCACCGCCGTCCAACGCCTCTCCCGGAACCCTAACCCTAACCCTAACCCAACCCAACAATCCAACCGATCAACTCCATTTCACCGAC
GAAGATGAACTCAATCTCCTGAATTACTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAACCCACTCTCGATTCTCCGACCTTGGACCGCATC
CAGACCGCTCTCGGCCCCAAATTCACCCACTCCCACATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACCAAGTCTTTCATCAAG
ACTCCCCACCACCGTCAGATCCTCGAGCTCGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCACGAGCACTT
TCACGAAGAATCAAACAAAGGTCAATCTCAAGACTCTCAAGGAAAGAAAAGGTTGATCTGAAGAACTATCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCG
GGCAATGGGGTGTGGAGAGAAGGGCTGAGGGCAATGGAAGAGAAGAGTTTGAATGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAG
GCAAGAAGGGCTTCATTATTAAAGCAGCAACTTAGAATTACAGAGACTTCTGAAGATGTGAATTAG
Protein sequenceShow/hide protein sequence
MSTSRRSPPSNASPGTLTLTLTQPNNPTDQLHFTDEDELNLLNYYLQIARSENPTKNSQPTLDSPTLDRIQTALGPKFTHSHIADKLHRLKLLYHKFARTKSFIK
TPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAMEEKSLNDMNEKWVLLHIEGAELK
ARRASLLKQQLRITETSEDVN