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CcUC02G041920 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC02G041920
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionExonuclease domain-containing protein
Genome locationCicolChr02:36951679..36952720
RNA-Seq ExpressionCcUC02G041920
SyntenyCcUC02G041920
Gene Ontology termsGO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21705.1 oligoribonuclease [Cucumis melo var. makuwa]9.2e-2982.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA +PLVNAFSVLELD ED+QIP+LSTSSKDDAT S  S TGKSKKEVNISGDI  GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

XP_004142177.1 oligoribonuclease [Cucumis sativus]8.4e-3082.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA++PLVNAFS+LELD ED+QIP+LSTSSKDDAT S PS TGK KKEVNISGDIL GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

XP_008449845.1 PREDICTED: oligoribonuclease [Cucumis melo]9.2e-2982.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA +PLVNAFSVLELD ED+QIP+LSTSSKDDAT S  S TGKSKKEVNISGDI  GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

XP_022996309.1 oligoribonuclease [Cucurbita maxima]6.6e-2779.52Show/hide
Query:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        +EP VNAFSVLELD ED+Q+   ST SKD+  ASS SRTGKSKKEVNISGDIL GERQKQ QPD+AAE+YKFPLVWIDLEMTG
Subjt:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

XP_038902868.1 oligoribonuclease isoform X1 [Benincasa hispida]1.9e-3490.59Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA++PLVNAFSVLELD ED+QIP+LSTSSKDDATASSPSRTGKSKKEVNISGDIL GE+QKQGQPD+AAENYKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

TrEMBL top hitse value%identityAlignment
A0A0A0KZ28 Exonuclease domain-containing protein4.0e-3082.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA++PLVNAFS+LELD ED+QIP+LSTSSKDDAT S PS TGK KKEVNISGDIL GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

A0A1S3BNX4 oligoribonuclease4.5e-2982.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA +PLVNAFSVLELD ED+QIP+LSTSSKDDAT S  S TGKSKKEVNISGDI  GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

A0A5D3DDV3 Oligoribonuclease4.5e-2982.35Show/hide
Query:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        MA +PLVNAFSVLELD ED+QIP+LSTSSKDDAT S  S TGKSKKEVNISGDI  GERQKQGQP+  AE+YKFPLVWIDLEMTG
Subjt:  MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

A0A6J1H2M6 oligoribonuclease5.5e-2779.52Show/hide
Query:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        +EP VNAFSVLELD ED+Q+   ST SKD+A ASS SRTGKSKKEVNISGDIL G+RQKQ QPD AAE+YKFPLVWIDLEMTG
Subjt:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

A0A6J1K8C8 oligoribonuclease3.2e-2779.52Show/hide
Query:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG
        +EP VNAFSVLELD ED+Q+   ST SKD+  ASS SRTGKSKKEVNISGDIL GERQKQ QPD+AAE+YKFPLVWIDLEMTG
Subjt:  LEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGGAGCCACTTGTAAACGCATTCTCGGTGTTGGAGCTCGATGTTGAAGACAATCAAATTCCCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTC
CCCTTCAAGAACAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATATTCTGGCAGGAGAAAGACAGAAACAAGGTCAACCAGATATAGCTGCAGAAAACTACAAAT
TTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTAACTAA
mRNA sequenceShow/hide mRNA sequence
GTAAAATCTTTAGCCCTAAAATTTATCTTATTTATTTTATACCATTTCCCAATTACAAAGTGGACGCGGAAAATTGATACAATATGACGAGAGAACCCACCGTGGGCGAG
GGAGGTTGTTCGGTCGTTTGAGAGTGATACGATTAATCTCTTTGGCGGCAAGATTTGGGAAGAGAGAGGGCGATGGCGTTGGAGCCACTTGTAAACGCATTCTCGGTGTT
GGAGCTCGATGTTGAAGACAATCAAATTCCCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTCCCCTTCAAGAACAGGAAAAAGCAAGAAGGAAGTTAATA
TCTCTGGTGATATTCTGGCAGGAGAAAGACAGAAACAAGGTCAACCAGATATAGCTGCAGAAAACTACAAATTTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTAAC
TAA
Protein sequenceShow/hide protein sequence
MALEPLVNAFSVLELDVEDNQIPSLSTSSKDDATASSPSRTGKSKKEVNISGDILAGERQKQGQPDIAAENYKFPLVWIDLEMTGN