; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC03G044390 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC03G044390
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionYrdC-like domain-containing protein
Genome locationCicolChr03:2234512..2239953
RNA-Seq ExpressionCcUC03G044390
SyntenyCcUC03G044390
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006450 - regulation of translational fidelity (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006070 - YrdC-like domain
IPR017945 - DHBP synthase RibB-like alpha/beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148791.1 yrdC domain-containing protein, mitochondrial isoform X1 [Cucumis sativus]1.5e-13989.16Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKM +SLSLIRTF TFPSS      LGS NYG++SF Q+NRGSR+SF KT WSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACS+ AVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLT++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

XP_008465284.1 PREDICTED: yrdC domain-containing protein, mitochondrial [Cucumis melo]2.8e-13887.76Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKM +SLSLIRTFATFPSSH     LGS NYG++SF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACS+ AVHRIYEIKGRKLTSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

XP_022998259.1 yrdC domain-containing protein, mitochondrial [Cucurbita maxima]1.8e-13789.47Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNT PAKMVE LSLIRTFATFPSS      LG+PNYG +SF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACSS AV+RIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        S TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRG +KI+RAGSAKEQTVATLERYSLLEEA S
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

XP_023521571.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo]2.8e-13889.82Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKMVE LSLIRTFATFPSS      LG+PNYG +SF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACSS AV+RIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        S TALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGT+KI+RAGSAKEQTVATL+RYSLLE+A S
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

XP_038893581.1 yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida]3.3e-14795.1Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MN LPAKMVESLSLIRTF TFPSSH     LGSPNYGL+SF QQNRGSR+SFPKTTWSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACSS AVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLT+RGTYKILRAGSAKEQTVA LERYSLLEEAASI
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

TrEMBL top hitse value%identityAlignment
A0A0A0LUP4 YrdC-like domain-containing protein7.1e-14089.16Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKM +SLSLIRTF TFPSS      LGS NYG++SF Q+NRGSR+SF KT WSLEKC MRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACS+ AVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLT++GT+KI+RAGSA+EQT+ATLERYSLLE AA+I
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A1S3CNI2 yrdC domain-containing protein, mitochondrial1.3e-13887.76Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKM +SLSLIRTFATFPSSH     LGS NYG++SF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACS+ AVHRIYEIKGRKLTSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A5A7T5W1 YrdC domain-containing protein1.3e-13887.76Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKM +SLSLIRTFATFPSSH     LGS NYG++SF Q+NRGSR+SF KT WSLEKC M VENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACS+ AVHRIYEIKGRKLTSPLAICVG VSDITR+A+TDHLPSGLLDSLLPGPVTVVLKRGE+S+L+KSLNPGLDSIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI
        SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLT+RGT+KI+RAGSA++QT+ATL+RYSLLE AA+I
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI

A0A6J1G9Z7 yrdC domain-containing protein, mitochondrial3.3e-13788.77Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNTLPAKMVE LS+IRTFATFPSS      LG+P+YG +SF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEA +ALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACSS AV+RIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        S TALALTSANLSGQPSSVCV+DFENLWQHCAYVYDGG+LPAGRAGSTIIDLTKRGT+KI+RAGSAKEQTVATLERYSLLEEA S
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

A0A6J1KDV4 yrdC domain-containing protein, mitochondrial8.7e-13889.47Show/hide
Query:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT
        MNT PAKMVE LSLIRTFATFPSS      LG+PNYG +SF   NRGSRL+FPKT WSLEKCSMRVEN LQALRPASEAFAQEAT+ALKAGKVIAVPTDT
Subjt:  MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDT

Query:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR
        LYGLACDACSS AV+RIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLLDSLLPGPVTVVLKRGE+SILEKSLNPGL+SIGVRVPDADFIRLISRR
Subjt:  LYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRR

Query:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS
        S TALALTSANLSG+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRG +KI+RAGSAKEQTVATLERYSLLEEA S
Subjt:  SETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAAS

SwissProt top hitse value%identityAlignment
Q0VC80 YrdC domain-containing protein, mitochondrial1.4e-4446.86Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS
        A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR  T PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS

Query:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYS
        +G+R+PD  F++ +++     LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST++DL+  G + I+R G A E T A L+ Y 
Subjt:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYS

Query:  LLEEAAS
        LL    S
Subjt:  LLEEAAS

Q3U5F4 YrdC domain-containing protein, mitochondrial3.0e-4245.67Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS
        A   L+AG V+AVPTDTLYGLAC A SS A+  +Y +KGR    PLA+C+G V+D+ R+     +P  LL+ L PGPVT+V++R E   L K LNP    
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS

Query:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERY
        +G+R+PD  F+  +++     LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST++DL+  G + I+R G A E T + L ++Y
Subjt:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERY

Query:  SLLEEAAS
         LL    S
Subjt:  SLLEEAAS

Q499R4 YrdC domain-containing protein, mitochondrial1.7e-4242.04Show/hide
Query:  GSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTD
        G+RL     + ++E  S       +ALR         A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR    PLA+C+G V+D+ R+    
Subjt:  GSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTD

Query:  HLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----P
         +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++     LALTSANLS Q SS+ V +F++LW H + V DGG +     P
Subjt:  HLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----P

Query:  AGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLE-RYSLLEEAAS
          R GST++DL+  G + I+R+G A E T A L+ +Y LL    S
Subjt:  AGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLE-RYSLLEEAAS

Q60369 Putative threonylcarbamoyl-AMP synthase1.7e-2136.97Show/hide
Query:  GKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR--GEASILEKSLNPGLDSIGVRV
        GK++   TDTLYG++ +A +  AV ++Y IK R+   PL+ICV D ++I ++A  + L   ++D  LPGP+T++LK+  G   I+ K      D IG+R+
Subjt:  GKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR--GEASILEKSLNPGLDSIGVRV

Query:  PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDL
        PD   IR +   S   L  TSAN+SG+ S   V++ +  + +   YV D G     +  STII +
Subjt:  PDADFIRLISRRSETALALTSANLSGQPSSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIIDL

Q86U90 YrdC domain-containing protein, mitochondrial1.2e-4347.12Show/hide
Query:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS
        A   L+AG V+AVPTDTLYGLAC A  S A+  +Y +KGR    PLA+C+G V+D+ R+     +P GLL  LLPGPVT+V++R E   L K LNP    
Subjt:  ATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDS

Query:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERY
        +G+R+PD  F++ +++  E  LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST++DL+  G + I+R G A E T A L ++Y
Subjt:  IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATL-ERY

Query:  SLLEEAAS
         LL   AS
Subjt:  SLLEEAAS

Arabidopsis top hitse value%identityAlignment
AT3G01920.1 DHBP synthase RibB-like alpha/beta domain3.6e-1129.47Show/hide
Query:  QEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSG----------LLDSLLPGPVTVVLKRGEAS
        Q   D LK G V  +PTDT+Y +ACD  +  AV R+  IK  + + PL+I    + DI  F  T   P G           +   LPGP T +L   +  
Subjt:  QEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSG----------LLDSLLPGPVTVVLKRGEAS

Query:  ILEKSLNPGLDS--------IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVYDGGVLPAGRAGSTIIDLTKRGTY
        + ++ +  G  S        +GVR+ D    + I ++ +  L  TS  + G   +  + D   +      +   +V DGG+  A    STI+D+T  G Y
Subjt:  ILEKSLNPGLDS--------IGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLW-----QHCAYVYDGGVLPAGRAGSTIIDLTKRGTY

Query:  -KILRAG
         K++R G
Subjt:  -KILRAG

AT5G60590.1 DHBP synthase RibB-like alpha/beta domain9.2e-3963.91Show/hide
Query:  LLSFFQQNRGSRLSF---PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVG
        L  F   N+  RL +    K  WSLE+    V +    + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACDACS  AV RIYEIKGRKLTSPLAICVG
Subjt:  LLSFFQQNRGSRLSF---PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVG

Query:  DVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR
        DV DI R A T HLP GLLDSLLPGPVT+VL+R
Subjt:  DVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKR

AT5G60590.2 DHBP synthase RibB-like alpha/beta domain3.6e-9169.35Show/hide
Query:  LLSFFQQNRGSRLSF---PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVG
        L  F   N+  RL +    K  WSLE+    V +    + PA+EA+AQEA +A+K+ KVIAVPTDTLYG ACDACS  AV RIYEIKGRKLTSPLAICVG
Subjt:  LLSFFQQNRGSRLSF---PKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVG

Query:  DVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYV
        DV DI R A T HLP GLLDSLLPGPVT+VL+RGE+SILEKSLNPG+ +IGVRVPD +FIR +SR S + LALTSANLSG  SSVCV DFENLWQHCAYV
Subjt:  DVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYV

Query:  YDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEE
        YDGG+LP+GRAGSTI+DLTK G YKI+R GSAK+ TVA LE+Y L EE
Subjt:  YDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGATTTTTACGTTTTAGGTTCTCCCAATTATGG
GCTACTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTC
GTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCT
TCTGGAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCA
TTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTA
TAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGC
GTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCAC
ATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGGTATTCACTATTAGAAGAAGCAGCTAGCATTTGA
mRNA sequenceShow/hide mRNA sequence
CCCACCTCACTCCGCCAACTGGGCGTCGACACTCATCCCGCAATTGCTCACTGCAAATCTTTTGATTTCAAATCCTTCACAATCCCACTTCTCTTTCTTCAAAACCCCGC
TAGGGGTTCGCGGGGTTAGCTTCTTGGTCATCACGGTTGCTACAGACCTCTACCTCAATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTT
TGCGACTTTTCCCTCTTCTCACCGAGATTTTTACGTTTTAGGTTCTCCCAATTATGGGCTACTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAA
CGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGG
AAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGGAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCC
TCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTAC
TAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCA
GAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGG
CGTTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTG
AAAGGTATTCACTATTAGAAGAAGCAGCTAGCATTTGAGCATCAGAATCTTGTCTTCTTGTTCATTATCATAGAGGTTGCAAAGATTTTTTTGGTAGGCTGAGTTAAAGT
AGATCAAGTCTAGATTGAGTCTTATGGCTTTACCATTTCATTTTTTATAATAACTATATTTCCGTTTGTTTATTAAGTTCTTGTTTTTATTTGTATAATTATGTAACATT
TAG
Protein sequenceShow/hide protein sequence
MNTLPAKMVESLSLIRTFATFPSSHRDFYVLGSPNYGLLSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACS
SGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVC
VNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERYSLLEEAASI