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CcUC03G045330 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC03G045330
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationCicolChr03:3502501..3502899
RNA-Seq ExpressionCcUC03G045330
SyntenyCcUC03G045330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]1.3e-5384.44Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRN RPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]1.4e-5283.7Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRN RP PSRFK+EAIR+R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]1.2e-4679.56Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD
        MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR RSS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E D GG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
XP_023001654.1 uncharacterized protein LOC111495727 [Cucurbita maxima]2.4e-4478.2Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+RSSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFR
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        EAD GGGR+QRK+RESCNSLRNLF+R +SRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]1.9e-5790.98Show/hide
Query:  MKKKSELQ-DDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MKKK ELQ DD HRHLEILKAVAQAWHSHTGSSK A+EFDAHRRN RPTPSRFKLEAIR RSSVSDRRWDF QSLWDSYEIVTVSKKLEAGLVLD DGFR
Subjt:  MKKKSELQ-DDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        E D GGGRSQRKKRESCNSLRNLFSRASSRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein6.8e-5383.7Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    D  RHLEILKAVAQAWHSHTG+SK A+EFDAHRRN RP PSRFK+EAIR+R S+VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A1S3AX17 uncharacterized protein LOC1034838296.2e-5484.44Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRN RPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A5A7UNW1 Uncharacterized protein6.2e-5484.44Show/hide
Query:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
        MKKK +L    DH RHLEILKAVAQAWH+HTG+SK A+EFDAHRRN RPTPSRFKLEAIR+R +SVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG
Subjt:  MKKKSELQD--DHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRAR-SSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDG

Query:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        FREA++GGGRSQRK+RESCNSLRNLF+RASSRRF+
Subjt:  FREADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
A0A6J1C5Z6 uncharacterized protein LOC1110087165.6e-4779.56Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD
        MKKK E++DD HRHLEILKAVAQAWHSHTGSSK A EFDAHRRN R TPSRFKLEAIR RSS  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGD

Query:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
         F E D GG GR QRK  ES NSLRNLF+R SSRRF+
Subjt:  GFREADAGG-GRSQRKKRESCNSLRNLFSRASSRRFH
A0A6J1KNC1 uncharacterized protein LOC1114957271.2e-4478.2Show/hide
Query:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR
        MK K+ ++D+   HLEILKAVAQAW SHTG+SK A+EFDAHRRN R  PSRFKLEAIR+RSSV+  RRWDF QSLWDSYEIV VSKKLEAGLVLDGDGFR
Subjt:  MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSD-RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFR

Query:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
        EAD GGGR+QRK+RESCNSLRNLF+R +SRRF+
Subjt:  EADAGGGRSQRKKRESCNSLRNLFSRASSRRFH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein4.3e-2346.15Show/hide
Query:  MKKKSELQDDHH-------RHLEILKAVAQAWHSHTGSSK-SATEFDAHRRN--FRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAG
        M+KK E +D++        + LE++KA AQAW SH+ +SK +  EFDA R++   +   SRFK EA+ A+   S   W+F QSLWD YEI++VSKKLE  
Subjt:  MKKKSELQDDHH-------RHLEILKAVAQAWHSHTGSSK-SATEFDAHRRN--FRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAG

Query:  LVLDGDGFREADAGGGRSQRKK--RESCNSLRNLFSRASSRRF
        L L+   F  +D  G +  +KK  R+S NSLR+LF+R+SS+RF
Subjt:  LVLDGDGFREADAGGGRSQRKK--RESCNSLRNLFSRASSRRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGCCATCTTGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGTCTGCAACTGA
ATTCGACGCCCATCGCCGGAATTTCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGC
TGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGG
AAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAATCAGAGCTTCAAGACGACCACCATCGCCATCTTGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCAGTTCTAAGTCTGCAACTGA
ATTCGACGCCCATCGCCGGAATTTCAGACCCACTCCTTCTCGGTTCAAGCTTGAGGCGATTCGAGCCCGGTCTTCCGTCAGCGATCGGAGATGGGACTTCGCCCAGTCGC
TGTGGGACTCGTATGAGATCGTCACGGTTTCCAAGAAGCTGGAGGCTGGGCTGGTGCTCGACGGAGATGGATTTCGGGAGGCCGACGCCGGCGGTGGGCGGAGTCAGAGG
AAAAAGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTCAGTAGGGCTTCTTCGAGGAGATTCCATTAA
Protein sequenceShow/hide protein sequence
MKKKSELQDDHHRHLEILKAVAQAWHSHTGSSKSATEFDAHRRNFRPTPSRFKLEAIRARSSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREADAGGGRSQR
KKRESCNSLRNLFSRASSRRFH