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CcUC03G048280 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC03G048280
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein LOL2
Genome locationCicolChr03:6101955..6104675
RNA-Seq ExpressionCcUC03G048280
SyntenyCcUC03G048280
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]7.6e-6796.18Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]1.2e-6494.66Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]1.9e-6595.45Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
        MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSS DMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSS-DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCS

Query:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        SCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  SCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]3.2e-6593.13Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEI+KDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]2.7e-6492.37Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEI+KDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein3.7e-6796.18Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6Q2 protein LOL2 isoform X45.9e-6594.66Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5A7UQS3 Protein LOL2 isoform X45.9e-6594.66Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A6J1EMN3 protein LOL21.6e-6593.13Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEI+KDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A6J1KRG9 protein LOL21.3e-6492.37Show/hide
Query:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
        M++HEI+KDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGAR VQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS
Subjt:  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSS

Query:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        CT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  CTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL22.6e-3356.35Show/hide
Query:  EIDKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E +++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIDKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG

P94077 Protein LSD14.3e-2044.55Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPT
        +  G A PP+
Subjt:  Q--GQAAPPT

Q0J7V9 Protein LSD13.3e-2055.13Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q704V3 Protein LOL53.0e-2655.24Show/hide
Query:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP
        P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA  V C+CC T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP

Query:  WSVQQ
         S++Q
Subjt:  WSVQQ

Q93ZB1 Protein LOL12.3e-2157.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 11.6e-2257.69Show/hide
Query:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein3.0e-2144.55Show/hide
Query:  PPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
        PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    
Subjt:  PPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ

Query:  Q--GQAAPPT
        +  G A PP+
Subjt:  Q--GQAAPPT

AT4G21610.1 lsd one like 21.8e-3456.35Show/hide
Query:  EIDKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
        E +++E++GPPPGWE    P P+        P P  +   + AQMVCG+CRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +
Subjt:  EIDKDEDDGPPPGWEPITPPLPL--------PPPPPLS-SDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS

Query:  VRCSSCTSVTEIGVHNRRPPWSVQQG
        VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  VRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCGCCACTTTCTTCC
GATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTA
GAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACG
GAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
TCATTAGCGCGGGACCCGTTGTGGTTCGCAGTTTGTTCTCATACATAGAAAACATGATCGATTCTTAGACGACAGATCGAGAGAATGGATGTCCATGAAATCGAT
AAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGT
GGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAA
GTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGG
CGTCCACCGTGGTCTGTCCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAGAATCTGTTCATCTATGAGATACTTCTGCTTAGGAAAAGATGTGGC
ATTTTCCGAAATTTTCTTTTCCGTTGCAGCCTGAATCAGCAGGCAGAGAAGGAAAACAACATTATCAATCACTACTCGCACTTTTATTACTTATTATTAGTTACT
GAGTTTATGTAAAGGAACTTAGGAACTGACCTTCCCAAATTCTTACATGTTTTTATCTCAAGTTTTTTGCCTTGTGACTTGACTTCCTGCTTATGCTCATTTTTA
GGCTGCTGATTGGAGCCTTATTAGGTGCTTCCAACCTCTGAGGTGTTCTTTTTTGGTAATTTGTAAATGATTGGAGCCTTTCGTATTGTCAAATTGTTGTGGCGT
AATTTAATGAGATGTGCCATCT
Protein sequenceShow/hide protein sequence
MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVT
EIGVHNRRPPWSVQQGQAAPPTNFVQ