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CcUC03G056830 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC03G056830
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionWD repeat containing protein
Genome locationCicolChr03:28764630..28768362
RNA-Seq ExpressionCcUC03G056830
SyntenyCcUC03G056830
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588036.1 hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2861.54Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI
        M  PRA L    SS SSP SLPPND LP+RFKV+WRVLLISNFALSAYMFASARKK   Q+EN + EK     +ND      +  I EIPST +VDTTGI
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI

Query:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR
        VTEN+ EDQ Q+   W+  GWREK G SK+
Subjt:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR

XP_004135711.1 uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus]1.6e-4278.51Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ
        MT PRAPLPSSSSS    + LPPND LPKRFKV+WRVLLISNFALSAYMFASARK+HF+QLEN QVEKQ+D+E+ITEIPST++VDTTGIVTEN+LEDQQQ
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ

Query:  QSNQWMDSGWREKLGFSKRVN
        + +Q + SGWREKLGFS++VN
Subjt:  QSNQWMDSGWREKLGFSKRVN

XP_008450851.1 PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo]3.9e-4175.21Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ
        MT  R PLPSSSSS    + LPPND LPKRFKV+WR+LLISNFALSAYMFASARK+HF++LEN QVEKQ+D+E+ITEIPST++VDTTGIVTEN+LEDQQQ
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ

Query:  QSNQWMDSGWREKLGFSKRVN
        + NQ + SGWREKLGFS+++N
Subjt:  QSNQWMDSGWREKLGFSKRVN

XP_023530326.1 uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo]4.5e-2962.31Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI
        M  PRA L    SS SSP SLPPND LP+RFKV+WRVLLISNFALSAYMFASARKK   Q+EN + EK     +ND      +  I EIPSTL+VDTTGI
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI

Query:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR
        VTEN+ EDQ Q+   W+  GWREK G SK+
Subjt:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR

XP_038880640.1 uncharacterized protein LOC120072271 [Benincasa hispida]2.2e-2885.9Show/hide
Query:  ALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQQSNQWMDSGWREKLGFSKRVN
        A+ AYMFASARKKHFDQLEN QVEKQ+D+EVITEIPSTL+VDTT IVTENMLEDQQQ+ NQWM SGWREKLGFSK+VN
Subjt:  ALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQQSNQWMDSGWREKLGFSKRVN

TrEMBL top hitse value%identityAlignment
A0A0A0M1X9 Uncharacterized protein7.7e-4378.51Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ
        MT PRAPLPSSSSS    + LPPND LPKRFKV+WRVLLISNFALSAYMFASARK+HF+QLEN QVEKQ+D+E+ITEIPST++VDTTGIVTEN+LEDQQQ
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ

Query:  QSNQWMDSGWREKLGFSKRVN
        + +Q + SGWREKLGFS++VN
Subjt:  QSNQWMDSGWREKLGFSKRVN

A0A1S3BR82 uncharacterized protein LOC1034923201.9e-4175.21Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ
        MT  R PLPSSSSS    + LPPND LPKRFKV+WR+LLISNFALSAYMFASARK+HF++LEN QVEKQ+D+E+ITEIPST++VDTTGIVTEN+LEDQQQ
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ

Query:  QSNQWMDSGWREKLGFSKRVN
        + NQ + SGWREKLGFS+++N
Subjt:  QSNQWMDSGWREKLGFSKRVN

A0A6J1D315 uncharacterized protein LOC1110165442.4e-2867.92Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ
        MT PRAPLP   SSSS P  LPPNDLLP+RFKVIWRVLLISNFAL+AYMFA+ARKK   ++E   VEK +D EV+T IPSTL+VDTT I  EN+ ED Q+
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQ

Query:  QSNQWM
        +  QWM
Subjt:  QSNQWM

A0A6J1EIP0 uncharacterized protein LOC1114337167.0e-2860.77Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI
        M  PRA L    SS SSP SL PND LP+RFKV+WRVLLISNFALSAYMFASARKK   Q+EN + EK     +ND      +  I EIPST +VDTTGI
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEK-----QND------NEVITEIPSTLVVDTTGI

Query:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR
        VTEN+ EDQ Q+   W+  GWREK G SK+
Subjt:  VTENMLEDQQQQSNQWMDSGWREKLGFSKR

A0A6J1HYA0 uncharacterized protein LOC111467730 isoform X11.8e-2861.07Show/hide
Query:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARK------------KHFDQLENGQVEKQNDNEVITEIPSTLVVDTTG
        M  PRA L    SS SSP SLPPND LP+RFKV+WRVLLISNFALSAYMFASARK            K   QLEN  +EK +D+E++ EIPST +VDTTG
Subjt:  MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARK------------KHFDQLENGQVEKQNDNEVITEIPSTLVVDTTG

Query:  IVTENMLEDQQQQSNQWMDSGWREKLGFSKR
        IVTEN+ EDQ Q+   W+  GWREK G SK+
Subjt:  IVTENMLEDQQQQSNQWMDSGWREKLGFSKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTCCCGCGGGCGCCTCTCCCATCTTCATCTTCATCTTCATCTTCCCCATCGTCTTTACCTCCCAATGATTTACTACCCAAACGCTTCAAGGTCATCTGGCGCGT
TCTATTGATCTCCAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAACATTTTGATCAACTGGAGAATGGTCAAGTAGAAAAACAAAATGATAATGAAG
TTATTACAGAAATCCCCTCAACACTTGTGGTAGATACCACTGGCATAGTTACTGAGAACATGTTGGAAGATCAGCAGCAACAATCAAACCAGTGGATGGACAGTGGTTGG
AGAGAAAAGTTAGGTTTTAGTAAAAGAGTGAATTGA
mRNA sequenceShow/hide mRNA sequence
CACATTCAAGCTTGGCGCACACACAAGAAACACACAAAAGACCGAGTCAGCGCTCAAGCAACGCCATTGCCAAGCATATTCAACTTCCACCACTTTCAATGACGGTCCCG
CGGGCGCCTCTCCCATCTTCATCTTCATCTTCATCTTCCCCATCGTCTTTACCTCCCAATGATTTACTACCCAAACGCTTCAAGGTCATCTGGCGCGTTCTATTGATCTC
CAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAACATTTTGATCAACTGGAGAATGGTCAAGTAGAAAAACAAAATGATAATGAAGTTATTACAGAAA
TCCCCTCAACACTTGTGGTAGATACCACTGGCATAGTTACTGAGAACATGTTGGAAGATCAGCAGCAACAATCAAACCAGTGGATGGACAGTGGTTGGAGAGAAAAGTTA
GGTTTTAGTAAAAGAGTGAATTGATGGTGAGATGCTGATTCTTTAACAGTTCATTCTCTCAAAACTGATTAGAGCTCATCCGGGTAAATATGTTCAGTTGCTGAAAATTT
TTGTTTTTAAGACTATTTTGTAGGAGAATGATATCTTCTTGTAGATTTGTTTACTTGTAACATAATTCAAAGAATGTTAGTTCATAT
Protein sequenceShow/hide protein sequence
MTVPRAPLPSSSSSSSSPSSLPPNDLLPKRFKVIWRVLLISNFALSAYMFASARKKHFDQLENGQVEKQNDNEVITEIPSTLVVDTTGIVTENMLEDQQQQSNQWMDSGW
REKLGFSKRVN