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CcUC04G060010 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G060010
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionArabinogalactan peptide 23-like
Genome locationCicolChr04:2445219..2449131
RNA-Seq ExpressionCcUC04G060010
SyntenyCcUC04G060010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]5.6e-1890.32Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        MEMKNFACAAF+AV ASLSMVLA++EAASPAPGPSSG SATLPVVGTLLGASA SLIAYCLQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]2.6e-1589.66Show/hide
Query:  NFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        NFACAAF+ VAASLSMVLA++EAASPAPGPSS ASATLPVVGTLLGASA SLIAYCLQ
Subjt:  NFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

PNT29922.1 hypothetical protein POPTR_006G056200 [Populus trichocarpa]1.2e-0764.52Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        ME+K  +CA  V VAAS+S  LAA+E ++PAP P+SGASATLPVVG+L+GAS VS  AY LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]1.4e-0869.84Show/hide
Query:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  AY L
Subjt:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL

PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]1.4e-0869.84Show/hide
Query:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  AY L
Subjt:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)1.6e-0762.9Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        M+MK  +CA  VA AAS+S VLA++++ +PAPGPSSGASA LPV G+L+GAS VS  AY LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

A0A2K1ZXB0 Uncharacterized protein5.6e-0864.52Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        ME+K  +CA  V VAAS+S  LAA+E ++PAP P+SGASATLPVVG+L+GAS VS  AY LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

A0A2P5CAP7 Uncharacterized protein6.6e-0969.84Show/hide
Query:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  AY L
Subjt:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL

A0A2P5F1L3 Uncharacterized protein6.6e-0969.84Show/hide
Query:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  AY L
Subjt:  FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL

A0A5D3E271 Arabinogalactan peptide 23-like2.7e-1890.32Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
        MEMKNFACAAF+AV ASLSMVLA++EAASPAPGPSSG SATLPVVGTLLGASA SLIAYCLQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 239.2e-0857.38Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        MEMK  AC    A AAS++ V+AA E  +PAPGP+S ASA LP +G+L+GAS VSL +Y L
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.0e-0656.45Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGP-SSGASATLPVVGTLLGASAVSLIAYCL
        MEMK  AC   V  AAS++ V+AA E  +PAPGP +SGAS  +P +G+L+GAS VSL AY L
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGP-SSGASATLPVVGTLLGASAVSLIAYCL

AT3G57690.1 arabinogalactan protein 236.6e-0957.38Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL
        MEMK  AC    A AAS++ V+AA E  +PAPGP+S ASA LP +G+L+GAS VSL +Y L
Subjt:  MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTGCATGGCTTTCAGCTAGTCTTTCTCCAGTATCCTTTTTTCCCCTCCTTTATCTTTTCATCATGGAAATGAAGAACTTCGCCTGTGCTGCGTTCGTCGCTGT
TGCCGCCTCCCTGAGCATGGTTTTAGCTGCCAATGAAGCGGCATCCCCAGCACCCGGCCCATCCAGCGGTGCCTCCGCTACTTTGCCCGTCGTCGGAACGTTGCTAGGTG
CATCTGCTGTCTCTCTCATTGCCTACTGCCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACTTGCATGGCTTTCAGCTAGTCTTTCTCCAGTATCCTTTTTTCCCCTCCTTTATCTTTTCATCATGGAAATGAAGAACTTCGCCTGTGCTGCGTTCGTCGCTGT
TGCCGCCTCCCTGAGCATGGTTTTAGCTGCCAATGAAGCGGCATCCCCAGCACCCGGCCCATCCAGCGGTGCCTCCGCTACTTTGCCCGTCGTCGGAACGTTGCTAGGTG
CATCTGCTGTCTCTCTCATTGCCTACTGCCTTCAGTAA
Protein sequenceShow/hide protein sequence
MGLAWLSASLSPVSFFPLLYLFIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ