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CcUC04G060200 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G060200
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCicolChr04:3413274..3414892
RNA-Seq ExpressionCcUC04G060200
SyntenyCcUC04G060200
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2088513.1 unnamed protein product [Brassica napus]2.5e-0834.71Show/hide
Query:  EANG--RASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHH
        +ANG  +    +W P  +G LK N D+S       G+G ++RD  G  LKA    QE     L AE LA L+   ++   G   +W E DS  L + I+ 
Subjt:  EANG--RASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHH

Query:  NSMQYSSIGGILDEIHEWMRK
            + S+G IL +I  WM K
Subjt:  NSMQYSSIGGILDEIHEWMRK

XP_021714646.1 uncharacterized protein LOC110682599 [Chenopodium quinoa]6.0e-1034.31Show/hide
Query:  LIGDFQKLNELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIA
        L+ DF++  E + G        G   +  A    W P  +G +K NVDAS      VGLG + RDS G+V+ AA +    +   L AE  A LFG  +  
Subjt:  LIGDFQKLNELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIA

Query:  KMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEI
        ++G +++ +EADS  LV  I  +S  ++++ GIL++I
Subjt:  KMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEI

XP_021717613.1 uncharacterized protein LOC110685390 [Chenopodium quinoa]1.9e-0833.09Show/hide
Query:  LIGDFQKLNELLAGEDMGVLRRGLEANGRASEGR--WYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNE
        ++ DF + +E + G+          +  R   GR  W P  +G +K NVDAS      VGLG + RD +G+VL +A +    +   L AE  A LFG  +
Subjt:  LIGDFQKLNELLAGEDMGVLRRGLEANGRASEGR--WYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNE

Query:  IAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEI
          +  + +I +EADS LLV  +   S   +++ GIL++I
Subjt:  IAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEI

XP_021746413.1 uncharacterized protein LOC110712260 [Chenopodium quinoa]5.6e-0837.86Show/hide
Query:  WYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGIL
        W P  +G +K NVDA+      VGLG + RD +G+VL +A +        L AE  A LFG  +  +  + NI +EADS LLV  +   S   +++ GIL
Subjt:  WYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGIL

Query:  DEI
        ++I
Subjt:  DEI

XP_021837042.1 uncharacterized protein LOC110776783 [Spinacia oleracea]7.4e-0829.94Show/hide
Query:  MNLIGDFQKLNELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNE
        M+L+G+F+  +       + +         R+ EG+W P ++   K N DA+      VGLGMV+RD  G V+ AA    +G  G+L  E  A+LFG   
Subjt:  MNLIGDFQKLNELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNE

Query:  IAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEIHEWMRKCQVRGISFISRN
            GL  + VE D   LV+    N    S+   I+ +I + +   +    +F  RN
Subjt:  IAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGGILDEIHEWMRKCQVRGISFISRN

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase3.9e-0734.33Show/hide
Query:  RGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRG-VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAI
        RGLE   R  E  W   + G  K N DAS  S+ G  GLG+V+RD +GK+L + A         L AEV A+LFGF    + G+    +E+DS L +  I
Subjt:  RGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRG-VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAI

Query:  HHNSMQYSSIGGILDEIHEWMRKCQVRGISFISR
        +         G +++EI E           F++R
Subjt:  HHNSMQYSSIGGILDEIHEWMRKCQVRGISFISR

A0A2I4ERH4 uncharacterized protein LOC1089920101.8e-0730.89Show/hide
Query:  RWYPRAVGDLKRNVDASTGSTRGV-GLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG
        RW     G  K NVD +      V G+G VLRDS+G+VL AAA  +   + +   E LA+L G      +G+ ++ +E+DS L+V     N    +++G 
Subjt:  RWYPRAVGDLKRNVDASTGSTRGV-GLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG

Query:  ILDEIHEWMRKCQVRGISFISRN
        ++ E+ + M   Q   ++ ++R+
Subjt:  ILDEIHEWMRKCQVRGISFISRN

A0A2I4HVW2 uncharacterized protein LOC1090219623.0e-0737.14Show/hide
Query:  RWYPRAVGDLKRNVDAST-GSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG
        +W+P + G LK NVDA+        G+G VLRD  G+V+ A +  +    G    E+LA+  G  + A MG+ NI VE+DS L + A++ ++M  S +G 
Subjt:  RWYPRAVGDLKRNVDAST-GSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG

Query:  ILDEI
        +  EI
Subjt:  ILDEI

A0A6P9ELN9 uncharacterized protein LOC1183476742.3e-0735.51Show/hide
Query:  RWYPRAVGDLKRNVDASTGSTRG-VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG
        +W P     LK NVD +     G  G+G +LR S G+VL A  + ++     +  E+LALL G      +G+  I VE+D  L ++A+H  ++  S  GG
Subjt:  RWYPRAVGDLKRNVDASTGSTRG-VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG

Query:  ILDEIHE
        I  EI E
Subjt:  ILDEIHE

A0A6P9EME2 uncharacterized protein LOC1183481736.7e-0737.14Show/hide
Query:  RWYPRAVGDLKRNVDAST-GSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG
        +W P + G LK NVDA+T       G+G VLRD +G++L A +  +    G  + E+LA+  G  +   MG+ ++ VE+DS L + A++ +SM  S +G 
Subjt:  RWYPRAVGDLKRNVDAST-GSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG

Query:  ILDEI
        I  EI
Subjt:  ILDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein3.9e-0727.52Show/hide
Query:  NELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRG---VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLI
        NE     ++ V    ++ + R S  +W P   G +K N D  +G T+G      G  +R+  G ++       +     L AE L  L     I   GL 
Subjt:  NELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRG---VGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLI

Query:  NIWVEADSQLLVKAIHHNSMQYSSIGGILDEIHEWMRKCQVRGISFISR
         +W E+DS+ LV  I +N   +S +G ++ +I  WM K     + F++R
Subjt:  NIWVEADSQLLVKAIHHNSMQYSSIGGILDEIHEWMRKCQVRGISFISR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0528.69Show/hide
Query:  RWYPRAVGDLKRNVDASTGSTRGV-GLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG
        +W P     LK N DAS      V GLG +LR+SQG V++      +G++    AE   L++        G   +  E D+Q + + I+  S     +  
Subjt:  RWYPRAVGDLKRNVDASTGSTRGV-GLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIWVEADSQLLVKAIHHNSMQYSSIGG

Query:  ILDEIHEWMRKCQVRGISFISR
         LD I  W+   +    SF  R
Subjt:  ILDEIHEWMRKCQVRGISFISR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGATAGGGGATTTCCAGAAGCTCAATGAGCTGTTGGCAGGGGAGGATATGGGCGTGCTTAGAAGGGGGTTGGAGGCGAATGGGAGAGCTTCAGAGGGAAGATG
GTATCCACGGGCTGTGGGAGATTTGAAGCGCAATGTGGATGCTTCTACTGGTTCGACTAGAGGAGTGGGTCTTGGGATGGTGTTGCGCGACTCACAGGGGAAGGTTCTGA
AGGCTGCAGCAAATTTTCAAGAAGGGAAGGTTGGAATGCTGGCAGCTGAAGTGTTGGCTCTGCTTTTTGGGTTTAATGAAATTGCTAAAATGGGTTTAATTAATATTTGG
GTTGAAGCTGACTCCCAATTGTTAGTTAAAGCCATACACCATAATTCTATGCAATATTCCTCAATTGGGGGGATTTTGGACGAGATTCATGAGTGGATGAGAAAATGTCA
AGTTAGAGGAATTTCTTTTATTTCTCGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGATAGGGGATTTCCAGAAGCTCAATGAGCTGTTGGCAGGGGAGGATATGGGCGTGCTTAGAAGGGGGTTGGAGGCGAATGGGAGAGCTTCAGAGGGAAGATG
GTATCCACGGGCTGTGGGAGATTTGAAGCGCAATGTGGATGCTTCTACTGGTTCGACTAGAGGAGTGGGTCTTGGGATGGTGTTGCGCGACTCACAGGGGAAGGTTCTGA
AGGCTGCAGCAAATTTTCAAGAAGGGAAGGTTGGAATGCTGGCAGCTGAAGTGTTGGCTCTGCTTTTTGGGTTTAATGAAATTGCTAAAATGGGTTTAATTAATATTTGG
GTTGAAGCTGACTCCCAATTGTTAGTTAAAGCCATACACCATAATTCTATGCAATATTCCTCAATTGGGGGGATTTTGGACGAGATTCATGAGTGGATGAGAAAATGTCA
AGTTAGAGGAATTTCTTTTATTTCTCGGAATTGATTTATGGCTTCCTCGAAGGAATCTAGATCCATTGAGGAGCTTTAG
Protein sequenceShow/hide protein sequence
MNLIGDFQKLNELLAGEDMGVLRRGLEANGRASEGRWYPRAVGDLKRNVDASTGSTRGVGLGMVLRDSQGKVLKAAANFQEGKVGMLAAEVLALLFGFNEIAKMGLINIW
VEADSQLLVKAIHHNSMQYSSIGGILDEIHEWMRKCQVRGISFISRN