CuGenDBv2

Gene ID	CcUC04G060310
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	CicolChr04:3872972..3920074
RNA-Seq Expression	CcUC04G060310
Synteny	CcUC04G060310
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AGJ51256.1 photosystem I P700 chlorophyll a apoprotein A1 [Solanum carolinense]

3.1e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

KAD4179914.1 hypothetical protein E3N88_28505 [Mikania micrantha]

1.8e-18

95.83

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQMG
        WKMQSDVWGS+SDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ G
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQMG

YP_009336378.1 photosystem I P700 apoprotein A2 [Nicotiana otophora]

3.1e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

YP_009751738.1 photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum]

3.1e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

YP_010143663.1 photosystem I P700 apoprotein A1 [Nicotiana amplexicaulis]

3.1e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

TrEMBL top hits

e value

%identity

Alignment

A0A0C5CUR3 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

A0A218KG56 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

A0A482BXY6 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

A0A482CDV0 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-18

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

A0A5N6N186 Uncharacterized protein

8.7e-19

95.83

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQMG
        WKMQSDVWGS+SDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ G
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQMG

SwissProt top hits

e value

%identity

Alignment

Q2MII7 Photosystem I P700 chlorophyll a apoprotein A1

4.0e-21

97.87

Show/hide

Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

4.0e-21

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Q33C36 Photosystem I P700 chlorophyll a apoprotein A1

4.0e-21

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Q3C1H8 Photosystem I P700 chlorophyll a apoprotein A1

4.0e-21

97.87

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Q8S8X4 Photosystem I P700 chlorophyll a apoprotein A1

4.0e-21

97.87

Show/hide

Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Arabidopsis top hits

e value

%identity

Alignment

ATCG00350.1 Photosystem I, PsaA/PsaB protein

3.7e-22

95.74

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Query:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM
        WKMQSDVWGS+SDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQ+
Subjt:  WKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQM

Sequences

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CDS sequence

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ATGTTTTGGAAAATGCAGTCAGATGTTTGGGGTAGTGTAAGTGATCAAGGGGTAGTAACTCATATTACGGGAGGAAACTTTGCGCAGAGTTCGATTACTATTAATGGGTG
GCTTCGCGATTTCTTATGGGCACAGGCATCCCAGATGGGAGGCAAAGAAAAGAAGGAGGAGGATAAAACCACTATACTATCACGGTCCTTGAGCGGATCCAACGTTAGCT
CCAAGACGTTGGTCTCTAACTAG

mRNA sequence

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Protein sequence

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MFWKMQSDVWGSVSDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQMGGKEKKEEDKTTILSRSLSGSNVSSKTLVSN

CcUC04G060310 (gene) of Watermelon (PI 537277) v1 genome