; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G060590 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G060590
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationCicolChr04:5224929..5225283
RNA-Seq ExpressionCcUC04G060590
SyntenyCcUC04G060590
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]1.3e-1877.19Show/hide
Query:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +N+A DSL+FLGDVG TDLNFL+ ILPHC +DQLMHIEN SKGRDLTP+T+KLWK F
Subjt:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]3.8e-2679.73Show/hide
Query:  MCEKASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+ SKI SSFL++ SINEA DSL+FLGDVG+TDL+ L+RILPHC +DQLMHIENSSKGRDLTP+TDKLWKNF
Subjt:  MCEKASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]5.1e-2374.32Show/hide
Query:  MCEKASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+ SKI SSFL++ SINEA D+L+FL DVG+TDL+ L RILPHC +DQL+HIENSSKGRDLT +TDKLWKNF
Subjt:  MCEKASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]5.0e-1869.35Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N+A D+L+FLGDVG TD++ LDRILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900481.1 transcription elongation factor B polypeptide 3-like isoform X2 [Benincasa hispida]5.0e-1869.35Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N+A D+L+FLGDVG TD++ LDRILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

TrEMBL top hitse value%identityAlignment
A0A0A0KGZ5 Uncharacterized protein3.1e-1869.35Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N+A D+L+FLGDVG TD++ LDRILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X21.6e-1766.13Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N+A D+++FLGDVG TD++ L+RILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1D807 transcription elongation factor B polypeptide 33.1e-1866.2Show/hide
Query:  KASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +A KI S  L  L +N A D+L+FLGDVG TD++ L+RILPHC +DQLMH+E SSKGRDLTP+TDKLWK F
Subjt:  KASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1IR58 uncharacterized protein LOC1114792526.3e-1977.19Show/hide
Query:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +N+A DSL+FLGDVG TDLNFL+ ILPHC +DQLMHIEN SKGRDLTP+T+KLWK F
Subjt:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1ITM2 uncharacterized protein LOC1114792435.4e-1875.44Show/hide
Query:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +N+A DSL+FLGDVG TDLNFL+ ILPHC ++QLM IENSSKGRDLTP+T+KLWK F
Subjt:  INEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).1.5e-1245.16Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L + +A D++K++G VG  D   L++IL HC ++QL HIE+++   DL+P+TDK WK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).1.5e-1245.16Show/hide
Query:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L + +A D++K++G VG  D   L++IL HC ++QL HIE+++   DL+P+TDK WK F
Subjt:  LTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGTGTGAAAAAGCAAGTAAAATCACTTCATCTTTTCTTACTTATCTTTCCATTAACGAAGCTACAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAAT
ACCGATTTAAATTTTCTTGATCGTATTTTACCACATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGAC
AAATTATGGAAAAATTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGTGTGAAAAAGCAAGTAAAATCACTTCATCTTTTCTTACTTATCTTTCCATTAACGAAGCTACAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAAT
ACCGATTTAAATTTTCTTGATCGTATTTTACCACATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGAC
AAATTATGGAAAAATTTCTAA
Protein sequenceShow/hide protein sequence
MKMCEKASKITSSFLTYLSINEATDSLKFLGDVGNTDLNFLDRILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF