CuGenDBv2

Gene ID	CcUC04G061930
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal protein S4
Genome location	CicolChr04:13747059..13748054
RNA-Seq Expression	CcUC04G061930
Synteny	CcUC04G061930
Gene Ontology terms	GO:0045903 - positive regulation of translational fidelity (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR022801 - Ribosomal protein S4/S9 IPR036986 - RNA-binding S4 domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QXX99538.1 ribosomal protein S4 [Macadamia integrifolia]

9.4e-129

76.35

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LR+KKRSI RKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN GM         HGDLISFQENDAR RGEEIRRSFYI+ISVEK+I  FLDHPVRMWRRTKTEWF LLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRNEKNRNLPTRTR  I+     +  S Y                      Y E N +    
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT

Query:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
           +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]

5.3e-132

77.98

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILRKLRNKKRSIKRKIYPR NLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVNKGM         HGDLISFQENDARIRGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTKKFGSEKVCLG+SFAEHNRMKRN YH KSLFLSNRRNEKNRNLPTRTR   PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

XP_042488740.1 LOW QUALITY PROTEIN: ribosomal protein S4, mitochondrial [Macadamia integrifolia]

9.4e-129

76.35

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LR+KKRSI RKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN GM         HGDLISFQENDAR RGEEIRRSFYI+ISVEK+I  FLDHPVRMWRRTKTEWF LLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRNEKNRNLPTRTR  I+     +  S Y                      Y E N +    
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT

Query:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
           +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

YP_009270662.1 ribosomal protein S4 [Nelumbo nucifera]

3.2e-129

76.35

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LRNKKRSIKRKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF +TIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN GM         HGDLISFQENDAR RGEEIRRSFYI+ISVEK+I  FLDHPVRMWRRTKTEWF LLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRN+KNRNLPTRTR  I+     +  S Y                      Y E N +    
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT

Query:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
           +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]

2.2e-133

78.87

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHFSETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVNKGM         HGD ISFQENDARIRGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR   PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

TrEMBL top hits

e value

%identity

Alignment

A0A1B0THE3 Ribosomal protein S4

1.6e-129

76.35

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LRNKKRSIKRKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF +TIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN GM         HGDLISFQENDAR RGEEIRRSFYI+ISVEK+I  FLDHPVRMWRRTKTEWF LLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRN+KNRNLPTRTR  I+     +  S Y                      Y E N +    
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR--IIRPIDPHPPSVY----------------------YEEQNQKDRTT

Query:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
           +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  YSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

A0A517LRL3 Ribosomal protein S4

2.2e-128

75.6

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LRNKKRSIKRKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN G+         HGD+ISFQENDAR RGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWF LLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTK+FGSEKVCLG  FAEHNRMKRNLYH KSLFLS RRNEKNRN+PTRT  I PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

A0A654ICA4 Rps4 protein

1.7e-128

76.19

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LRNKKRSIKRKIYPR+NLNSYIQSQTT+ LPL HGDLPITEMHRGTER SYI FPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN  M         HGD+ISFQENDARIRGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRNEKNRNLPTRTR   PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

A0A7D6BZG8 Ribosomal protein S4

1.0e-133

78.87

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTT+ LPL HGDLPITEMHRGTERTSYIPFPLN ETRSDVIPVRLHFSETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVNKGM         HGD ISFQENDARIRGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTR   PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

B6VJZ4 Ribosomal protein S4

1.7e-128

76.19

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS
        NV NR LTIIQRRILR+LRNKKRSIKRKIYPR+NLNSYIQSQTT+ LPL HGDLPITEMHRGTER SYI FPLN ETRSDVIPVRLHF ETIPQARQPIS
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPIS

Query:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED
        HRRVCVN  M         HGD+ISFQENDARIRGEEIRRSFYIEISVEK+I  FLDHPVRMWRRTKTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEED
Subjt:  HRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEED

Query:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR
        LERTKKFGSEKVCLG+SFAEHNRMKRNLYH KSLFLS RRNEKNRNLPTRTR   PI                PH  ++           +Y E N +  
Subjt:  LERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI---------------DPHPPSV-----------YYEEQNQKDR

Query:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
             +G   GHIPHDIRLKDPNLPLRSGNGRGQNI
Subjt:  TTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

SwissProt top hits

e value

%identity

Alignment

P26866 Ribosomal protein S4, mitochondrial

2.2e-11

39.29

Show/hide

Query:  LTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYI----PFPLNRETRSDVIPVRLHFSETIPQARQPISHR
        LT+ Q+ ++ +L+ +K++ K+  +        IQ QT + L L +G+LPI +M R    T YI        N E R DVI VRL+F  T+ QARQ ISH+
Subjt:  LTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYI----PFPLNRETRSDVIPVRLHFSETIPQARQPISHR

Query:  RVCVN--KGMFP-----HGDLISFQENDARIRGEEIRRSF
         +CVN  K   P     +GDLIS QEN        IR++F
Subjt:  RVCVN--KGMFP-----HGDLISFQENDARIRGEEIRRSF

Q31708 Ribosomal protein S4, mitochondrial

3.3e-108

67.55

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI
        NV NR LTIIQRRILR+LRN+KRSI KRKIYP++ L SYIQ QTT+ LP  +GDLPITEMHRGT+RTSYIPF LN ETR DVIP+RL+F ETIPQARQ I
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI

Query:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE
        SHRRVCVNKGM         HGD+ISFQEN+A IRGEEIRRSFY EI VEK+I   L  P+RMWRR+KTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEE
Subjt:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE

Query:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ
        DLERTKKFGSEKVCLG+SFAEH RMKRNL  LKSLFLS RR +KN NLPTRT  I PI                  PH  ++           +Y E N 
Subjt:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ

Query:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
        +       +G   GHIPHDIRLKD NL L S NGRGQNI
Subjt:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein

1.4e-117

70.21

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI
        NV NR LTIIQRRILR+LRN+KRSI KRKIYP++ L SYIQ QTT+ LPL HGDLPITEMHRGT+RTSYIPFPLN ETR DVIP+RLHF ETIPQARQPI
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI

Query:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE
        SHRRVCVNKGM         HGD+ISFQEN+A IRGEEIRRSFY EISVEK+I   L  P+RMWRR+KTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEE
Subjt:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE

Query:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ
        DLERTKKFGSEKVCLG+SFAEH RMKRNL  LKSLFLS RR +KN NLPTRT  I PI                  PH  ++           +Y E N 
Subjt:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ

Query:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
        +       +G   GHIPHDIRLKDPNLPLRS NGRGQNI
Subjt:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

ATMG00290.1 mitochondrial ribosomal protein S4

1.4e-117

70.21

Show/hide

Query:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI
        NV NR LTIIQRRILR+LRN+KRSI KRKIYP++ L SYIQ QTT+ LPL HGDLPITEMHRGT+RTSYIPFPLN ETR DVIP+RLHF ETIPQARQPI
Subjt:  NVCNRGLTIIQRRILRKLRNKKRSI-KRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPI

Query:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE
        SHRRVCVNKGM         HGD+ISFQEN+A IRGEEIRRSFY EISVEK+I   L  P+RMWRR+KTEWFHLLKTKRGC LLLKSRFLQQLRSSMQEE
Subjt:  SHRRVCVNKGM-------FPHGDLISFQENDARIRGEEIRRSFYIEISVEKLI--FLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEE

Query:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ
        DLERTKKFGSEKVCLG+SFAEH RMKRNL  LKSLFLS RR +KN NLPTRT  I PI                  PH  ++           +Y E N 
Subjt:  DLERTKKFGSEKVCLGNSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPI-----------------DPHPPSV-----------YYEEQNQ

Query:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI
        +       +G   GHIPHDIRLKDPNLPLRS NGRGQNI
Subjt:  KDRTTYSLFG---GHIPHDIRLKDPNLPLRSGNGRGQNI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AATGTTTGCAACAGAGGACTTACAATAATACAACGCCGCATTCTCCGAAAATTGAGAAACAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAGAAAATCTT
AACAGTTACATCCAATCACAAACTACACAAATGTTGCCCCTAAATCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCT
TTTCCACTCAATCGAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGT
GTGAATAAAGGAATGTTTCCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCA
GTTGAAAAACTCATATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGTTGCCTACTACTA
AAATCCCGATTTTTGCAACAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCAGAAAAAGTATGCTTAGGCAATTCCTTCGCT
GAGCACAACAGAATGAAGAGGAATTTGTATCATTTGAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAATAATT
CGACCTATTGATCCGCATCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTCACATCCCTCATGACATAAGA
TTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

NVCNRGLTIIQRRILRKLRNKKRSIKRKIYPRENLNSYIQSQTTQMLPLNHGDLPITEMHRGTERTSYIPFPLNRETRSDVIPVRLHFSETIPQARQPISHRRVC
VNKGMFPHGDLISFQENDARIRGEEIRRSFYIEISVEKLIFLDHPVRMWRRTKTEWFHLLKTKRGCCLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGNSFA
EHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRIIRPIDPHPPSVYYEEQNQKDRTTYSLFGGHIPHDIRLKDPNLPLRSGNGRGQNI

CcUC04G061930 (gene) of Watermelon (PI 537277) v1 genome