CuGenDBv2

Gene ID	CcUC04G062760
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Genome location	CicolChr04:17708227..17740255
RNA-Seq Expression	CcUC04G062760
Synteny	CcUC04G062760
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

EFH44670.1 hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]

7.5e-34

89.02

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Query:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL
        +RSALHRQTWDLRSQKKSCNEG SYLYKWYFELGTSMK  TILLYLLSCS+GSV QDLWSLP PDEKN ITSYG VENDSDL
Subjt:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL

EFH63160.1 hypothetical protein ARALYDRAFT_475624 [Arabidopsis lyrata subsp. lyrata]

7.5e-34

89.02

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Query:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL
        +RSALHRQTWDLRSQKKSCNEG SYLYKWYFELGTSMK  TILLYLLSCS+GSV QDLWSLP PDEKN ITSYG VENDSDL
Subjt:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

1.7e-33

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

QJR53001.1 hypothetical protein RF2 [Herpetospermum pedunculosum]

1.7e-33

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

1.7e-33

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

8.1e-34

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

A0A6H0ET42 Protein Ycf2

8.1e-34

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

A0A6M3RUH1 Protein Ycf2

8.1e-34

68.07

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

D7KRS3 Protein Ycf2

3.6e-34

89.02

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Query:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL
        +RSALHRQTWDLRSQKKSCNEG SYLYKWYFELGTSMK  TILLYLLSCS+GSV QDLWSLP PDEKN ITSYG VENDSDL
Subjt:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL

D7MHQ6 AAA domain-containing protein

3.6e-34

89.02

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Query:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL
        +RSALHRQTWDLRSQKKSCNEG SYLYKWYFELGTSMK  TILLYLLSCS+GSV QDLWSLP PDEKN ITSYG VENDSDL
Subjt:  LRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDL

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

1.2e-34

65.55

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYG VENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

B1A978 Protein Ycf2

1.2e-34

65.55

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYG VENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

Q0G9Q1 Protein Ycf2

2.7e-34

64.71

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSA HRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDE+NGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

Q0ZIV6 Protein Ycf2

4.1e-35

66.39

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYGLVENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

Q2L949 Protein Ycf2

1.2e-34

65.55

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Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKKLTILLYLLSCSAGSV QDLWSLPG
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKNGITSYG VENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-33

63.03

Show/hide

Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKK TILLYLLSCSAGSV QDLWSLP 
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKN ITSYG VENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-33

63.03

Show/hide

Query:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG
        +RSALHRQTWDLRSQ                                     KKSCNEG SYLYKWYFELGTSMKK TILLYLLSCSAGSV QDLWSLP 
Subjt:  LRSALHRQTWDLRSQ-------------------------------------KKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPG

Query:  PDEKNGITSYGLVENDSDL
        PDEKN ITSYG VENDSDL
Subjt:  PDEKNGITSYGLVENDSDL

Sequences

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CDS sequence

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CAACAAGAATCAGCAAAGGAAAAGCTTTCCCTCAATGATGGCCATAGTGAATCAATAAATCCTGAGCAAAAAGATCTTCCTCCAGGATTATACCCGTTTGCCCCA
TTCACATGCATTATGAGGCCCACGCTTGAGTGGTATGGCCCAGCCTCGAATTTCGGGTTTGAGGCCAAGGCTGACCTCATGGTAACAGACCCTTTTTGCCCTATA
AAGGTGCATTATGAGGTCCACCTGTCGAGTGCTATGGCCCAACCCAATATTTCGGGTTTGAGGCCAAGGCTGACCTTGTGGTTCCGTATGGATTTGACTCATACT
GCCACTTCTATAGAGTTAAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTAC
TTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGCTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCCGAT
GAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAAAGTGGGCGTGTGCTCATAGGTGTAAGCGTGCGCATAGGCGCACACCCGAGGCC
GTCTGCGAGGTAGGGTGTGCACGTAGGAAGCTTGCCTACAAGCGCATGCACACGCCACTCACAACTGGCATTAGTCAGCAGGCATGCGCACATGCAAAGCCAGGT
GCGCAAACGGGCCCACTTGGGGCATCTGAGCTG

mRNA sequence

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Protein sequence

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QQESAKEKLSLNDGHSESINPEQKDLPPGLYPFAPFTCIMRPTLEWYGPASNFGFEAKADLMVTDPFCPIKVHYEVHLSSAMAQPNISGLRPRLTLWFRMDLTHT
ATSIELRSALHRQTWDLRSQKKSCNEGGSYLYKWYFELGTSMKKLTILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLKWACAHRCKRAHRRTPEA
VCEVGCARRKLAYKRMHTPLTTGISQQACAHAKPGAQTGPLGASEL

CcUC04G062760 (gene) of Watermelon (PI 537277) v1 genome