; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G062900 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G062900
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLeucine-rich repeat extensin-like protein 3
Genome locationCicolChr04:18085890..18086414
RNA-Seq ExpressionCcUC04G062900
SyntenyCcUC04G062900
Gene Ontology termsGO:0010227 - floral organ abscission (biological process)
InterPro domainsIPR039639 - Protein IDA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF52015.1 conserved hypothetical protein [Ricinus communis]1.0e-1340.74Show/hide
Query:  VNIPQLPQSKINFGVYPKGFSVPPP-----TSIHNSSPPP---TSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPP-
        +N   L   +++FG+ PKG  +PP      +SI +  PPP    S ++FG+ PKG  IPP  P   S PP S  ++FG+ PKG  IPP  P   S PPP 
Subjt:  VNIPQLPQSKINFGVYPKGFSVPPP-----TSIHNSSPPP---TSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPP-

Query:  ------SNNINFGVYPKGFSIPPPNPIHNSSPPPT
              + N+NFG+ PKG  IPP  P   +S PP+
Subjt:  ------SNNINFGVYPKGFSIPPPNPIHNSSPPPT

KAG6601492.1 hypothetical protein SDJN03_06725, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0939.82Show/hide
Query:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI
        P   IN+G+ PK   +PP    H    PP   I++G+ PK   IPP  P H    PP   IN+G+ PK   IPP  P H    PP + IN+G+ PK   I
Subjt:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI

Query:  PPPNPIHNSSPPP
        PP  P H +   P
Subjt:  PPPNPIHNSSPPP

KAG6603169.1 hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1140.24Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPP--PTSIHNSSPPP------------TSKISFGVHPKGSSIPPPSPIHNSS----PPP---------SS
        P PR+S   ++    QSKINFG+ PKG  +PP  P+   ++ PPP             SKI+FG+ PKG  IPP  P   +S    PPP          S
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPP--PTSIHNSSPPP------------TSKISFGVHPKGSSIPPPSPIHNSS----PPP---------SS

Query:  KINFGVYPKGFSIPPPNPIHNSS----PPP---------SNNINFGVYPKGFSIPPPNPIHNSS--PPP
        KINFG+ PKG  IPP  P   +S    PPP          + INFG+ PKG  IPP  P   +S  PPP
Subjt:  KINFGVYPKGFSIPPPNPIHNSS----PPP---------SNNINFGVYPKGFSIPPPNPIHNSS--PPP

XP_022957281.1 basic proline-rich protein-like [Cucurbita moschata]1.1e-0939.82Show/hide
Query:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI
        P   IN+G+ PK   +PP    H    PP   I++G+ PK   IPP  P H    PP   IN+G+ PK   IPP  P H    PP + IN+G+ PK   I
Subjt:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI

Query:  PPPNPIHNSSPPP
        PP  P H +   P
Subjt:  PPPNPIHNSSPPP

XP_022967687.1 actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima]1.3e-1041.67Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSS----PPP---------TSKISFGVHPKGSSIPPPSPIHNSS----PPPS---SKINFGVY
        P PR+S   ++    QSKI  G+ P+G  +PPP     +S    PPP          SKI+FG+ PKG  IPP  P H +S    PPP     KINFG+ 
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSS----PPP---------TSKISFGVHPKGSSIPPPSPIHNSS----PPPS---SKINFGVY

Query:  PKGFSIPPPNPIHNSS---PPPSN----NINFGVYPKGFSIPPPNPIHNSS--PPP
        PK   IPP  P   +S   PPP +     INFG+ PKG  IPP  P   +S  PPP
Subjt:  PKGFSIPPPNPIHNSS---PPPSN----NINFGVYPKGFSIPPPNPIHNSS--PPP

TrEMBL top hitse value%identityAlignment
A0A061FHV4 Uncharacterized protein2.7e-0944.55Show/hide
Query:  PPTSKISFGVHPKGSSIPPPSPIHNSS-----PPPSSKINFGVYPKGFSIPPPNPIHNSS-----PPPSNNINFGVYPKGFSIPPPNPIHNSS---PPPT
        P  S+++FGV PKG  IPP  P   +S     PPP   +NFG++PKG  IPP  P   +S     PPP+  +NFG +PKG  IPP  P   +S   PPP 
Subjt:  PPTSKISFGVHPKGSSIPPPSPIHNSS-----PPPSSKINFGVYPKGFSIPPPNPIHNSS-----PPPSNNINFGVYPKGFSIPPPNPIHNSS---PPPT

Query:  K
        K
Subjt:  K

A0A2Z6N3Z2 Uncharacterized protein2.1e-0940.29Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGF--SVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP---IHNSSPPPSSKINFGVYPKGFSIPPPNPIHNS
        P P SSL +N   LP+  +       GF    PPP  +    PPP S ++FG+ PKG  +PP  P    ++  PPP S +NFG+ PKG  +PP  P    
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGF--SVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP---IHNSSPPPSSKINFGVYPKGFSIPPPNPIHNS

Query:  SPPP-----SNNINFGVYPKGFSIPPPNPIHNS--SPPP
          PP     S+N+NFG+ PKG  +PP  P   S  SPPP
Subjt:  SPPP-----SNNINFGVYPKGFSIPPPNPIHNS--SPPP

A0A6J1GYS8 basic proline-rich protein-like5.5e-1039.82Show/hide
Query:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI
        P   IN+G+ PK   +PP    H    PP   I++G+ PK   IPP  P H    PP   IN+G+ PK   IPP  P H    PP + IN+G+ PK   I
Subjt:  PQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSI

Query:  PPPNPIHNSSPPP
        PP  P H +   P
Subjt:  PPPNPIHNSSPPP

A0A6J1HRH7 actin cytoskeleton-regulatory complex protein PAN1-like6.5e-1141.67Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSS----PPP---------TSKISFGVHPKGSSIPPPSPIHNSS----PPPS---SKINFGVY
        P PR+S   ++    QSKI  G+ P+G  +PPP     +S    PPP          SKI+FG+ PKG  IPP  P H +S    PPP     KINFG+ 
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSS----PPP---------TSKISFGVHPKGSSIPPPSPIHNSS----PPPS---SKINFGVY

Query:  PKGFSIPPPNPIHNSS---PPPSN----NINFGVYPKGFSIPPPNPIHNSS--PPP
        PK   IPP  P   +S   PPP +     INFG+ PKG  IPP  P   +S  PPP
Subjt:  PKGFSIPPPNPIHNSS---PPPSN----NINFGVYPKGFSIPPPNPIHNSS--PPP

B9RB38 Uncharacterized protein4.8e-1440.74Show/hide
Query:  VNIPQLPQSKINFGVYPKGFSVPPP-----TSIHNSSPPP---TSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPP-
        +N   L   +++FG+ PKG  +PP      +SI +  PPP    S ++FG+ PKG  IPP  P   S PP S  ++FG+ PKG  IPP  P   S PPP 
Subjt:  VNIPQLPQSKINFGVYPKGFSVPPP-----TSIHNSSPPP---TSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPP-

Query:  ------SNNINFGVYPKGFSIPPPNPIHNSSPPPT
              + N+NFG+ PKG  IPP  P   +S PP+
Subjt:  ------SNNINFGVYPKGFSIPPPNPIHNSSPPPT

SwissProt top hitse value%identityAlignment
C1PGW1 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7A2.3e-0534.13Show/hide
Query:  PQLPQSKINFGVYPKGFSVPPPTSIHNSSPP----PTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIH------NSSPPPSN
        P  P +     + P   SVPPP+  H+  PP    P       V P   ++PPPSP H  SPPP             ++PPP+P H      ++ PPPS 
Subjt:  PQLPQSKINFGVYPKGFSVPPPTSIHNSSPP----PTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIH------NSSPPPSN

Query:  NINFGVYPKGFSIPPPNPIHNSSPPP
        +    V P    +PPP+P H + PPP
Subjt:  NINFGVYPKGFSIPPPNPIHNSSPPP

E9PYK3 Protein mono-ADP-ribosyltransferase PARP48.8e-0536.23Show/hide
Query:  LPQSKINFGVYPKGFSVPPPTSIH-NSSPPPTSKISFGVH-------PKGSSIPPPSPIHNSS-PPPSSKINFGVY-------PKGFSIPPPNPIHNSSP
        +P S   FG    G  +PPP  +   +  PP   +S G H       P G+ IPPP PI  S+ PPP S +  G +       P G  IPPP PI   + 
Subjt:  LPQSKINFGVYPKGFSVPPPTSIH-NSSPPPTSKISFGVH-------PKGSSIPPPSPIHNSS-PPPSSKINFGVY-------PKGFSIPPPNPIHNSSP

Query:  PPSNNINFG--------VYPKGFSIPPPNPIHNSSPPP
         PS +  FG        + P G  IPPP PI  S+ PP
Subjt:  PPSNNINFG--------VYPKGFSIPPPNPIHNSSPPP

O65375 Leucine-rich repeat extensin-like protein 13.3e-0435.66Show/hide
Query:  PQLPQSKINFGVYPKGFSVPPPTS--------IHNSSPPPTSKISFGVH-----PKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPP
        P  P SK++  V  + +S PPP S         ++  PPP SK+S  V      P  S  PPP  +++S PPP    +    P  +S PPP P   SSPP
Subjt:  PQLPQSKINFGVYPKGFSVPPPTS--------IHNSSPPPTSKISFGVH-----PKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPP

Query:  PSNNINFGVYPKGFSIPPPNPIHNSSPPP
        P         P  +S PPP  +++S PPP
Subjt:  PSNNINFGVYPKGFSIPPPNPIHNSSPPP

P13983 Extensin3.3e-0437.04Show/hide
Query:  PKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSP------PPSNNINFGVYPKGFSIPPPN
        P  +S PPP       PPPT    +   P   S PPPSPI++  PP    +     P  FS PPP  IH   P      PP+        P  FS PPP 
Subjt:  PKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSP------PPSNNINFGVYPKGFSIPPPN

Query:  PIHNSSPP
         IH+  PP
Subjt:  PIHNSSPP

Q9T0K5 Leucine-rich repeat extensin-like protein 31.0e-0838.81Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP-IHNSSPPPSSKINFGVYPKG---FSIPPPNPIHNSS
        P P SS   + P  P S     +YP     PPPT +  SSPPPT   S    P     PPP P I  S PPP   +++   P     +S PPP P++ SS
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP-IHNSSPPPSSKINFGVYPKG---FSIPPPNPIHNSS

Query:  PPPSNNINFGVYPK---GFSIPPPNPIHNSSPPP
        PPP   +++   P     +  PPP+P+H SSPPP
Subjt:  PPPSNNINFGVYPK---GFSIPPPNPIHNSSPPP

Arabidopsis top hitse value%identityAlignment
AT1G12040.1 leucine-rich repeat/extensin 12.4e-0535.66Show/hide
Query:  PQLPQSKINFGVYPKGFSVPPPTS--------IHNSSPPPTSKISFGVH-----PKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPP
        P  P SK++  V  + +S PPP S         ++  PPP SK+S  V      P  S  PPP  +++S PPP    +    P  +S PPP P   SSPP
Subjt:  PQLPQSKINFGVYPKGFSVPPPTS--------IHNSSPPPTSKISFGVH-----PKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPP

Query:  PSNNINFGVYPKGFSIPPPNPIHNSSPPP
        P         P  +S PPP  +++S PPP
Subjt:  PSNNINFGVYPKGFSIPPPNPIHNSSPPP

AT1G49490.1 Leucine-rich repeat (LRR) family protein1.2e-0436.51Show/hide
Query:  PQLPQSKINFGVY---PKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPS---PIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINF
        P +P       +Y   P   S PPP  +++S PPP     +   P  +S PPPS   P+H+  PPP     F   P  FS PPP+P++ S PPPS++   
Subjt:  PQLPQSKINFGVY---PKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPS---PIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINF

Query:  GVYPKGFSIPPPN----PIHNSSPPP
           P  +S PPP     P HN++ PP
Subjt:  GVYPKGFSIPPPN----PIHNSSPPP

AT2G15880.1 Leucine-rich repeat (LRR) family protein4.0e-0535.25Show/hide
Query:  VHGNDVDVLRPR-PRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPP
        VH     V +P+ P+ S + N P   QS + F         PPP  +H  SPPP S I     P   S PPP P+++  PPP            +S PPP
Subjt:  VHGNDVDVLRPR-PRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPP

Query:  NPIHNSSPPPSNNINFGVY--PKGFSIPPPNPIHNSSPP
         P+H S PPP ++    V+  P     PPP P+H+  PP
Subjt:  NPIHNSSPPPSNNINFGVY--PKGFSIPPPNPIHNSSPP

AT2G24980.1 Proline-rich extensin-like family protein9.0e-0536.44Show/hide
Query:  NIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYP
        N P  P    +  VY K    PPP  +++S PPP    S  V+ K    PPP  +++S PPP    +  VY K    PPP+ +++S PPP  + +  VY 
Subjt:  NIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYP

Query:  KGFSIPPPNPIHNSSPPP
        K    PPP+ +++S PPP
Subjt:  KGFSIPPPNPIHNSSPPP

AT4G13340.1 Leucine-rich repeat (LRR) family protein7.1e-1038.81Show/hide
Query:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP-IHNSSPPPSSKINFGVYPKG---FSIPPPNPIHNSS
        P P SS   + P  P S     +YP     PPPT +  SSPPPT   S    P     PPP P I  S PPP   +++   P     +S PPP P++ SS
Subjt:  PRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPPPSP-IHNSSPPPSSKINFGVYPKG---FSIPPPNPIHNSS

Query:  PPPSNNINFGVYPK---GFSIPPPNPIHNSSPPP
        PPP   +++   P     +  PPP+P+H SSPPP
Subjt:  PPPSNNINFGVYPK---GFSIPPPNPIHNSSPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCTAAAAGTAAGAAAGTATTGTTTGGAATTTGTATTCTTCATTTTGTTCTTGGAGGGGAATTTACCACCAGCCAGATAGAGGCAAGAAAGATAGCAGAA
GTCCATGGAAATGATGTCGATGTTCTTAGACCTCGACCGAGGTCTAGCTTAGAAGTAAACATTCCTCAGCTTCCACAAAGTAAGATTAACTTTGGAGTTTATCCG
AAGGGCTTTTCTGTACCTCCACCTACCTCAATACATAACTCATCTCCTCCTCCAACCAGTAAAATTAGCTTTGGAGTTCATCCAAAAGGCTCTTCGATTCCTCCA
CCTAGCCCGATACATAACTCCTCTCCTCCTCCATCTAGTAAGATTAACTTTGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCT
TCTCCTCCTCCATCCAATAATATTAACTTTGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCCACCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCTAAAAGTAAGAAAGTATTGTTTGGAATTTGTATTCTTCATTTTGTTCTTGGAGGGGAATTTACCACCAGCCAGATAGAGGCAAGAAAGATAGCAGAA
GTCCATGGAAATGATGTCGATGTTCTTAGACCTCGACCGAGGTCTAGCTTAGAAGTAAACATTCCTCAGCTTCCACAAAGTAAGATTAACTTTGGAGTTTATCCG
AAGGGCTTTTCTGTACCTCCACCTACCTCAATACATAACTCATCTCCTCCTCCAACCAGTAAAATTAGCTTTGGAGTTCATCCAAAAGGCTCTTCGATTCCTCCA
CCTAGCCCGATACATAACTCCTCTCCTCCTCCATCTAGTAAGATTAACTTTGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCT
TCTCCTCCTCCATCCAATAATATTAACTTTGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCCACCAAATAA
Protein sequenceShow/hide protein sequence
MVPKSKKVLFGICILHFVLGGEFTTSQIEARKIAEVHGNDVDVLRPRPRSSLEVNIPQLPQSKINFGVYPKGFSVPPPTSIHNSSPPPTSKISFGVHPKGSSIPP
PSPIHNSSPPPSSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPKGFSIPPPNPIHNSSPPPTK