; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G063080 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G063080
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionexosome complex component RRP4 homolog
Genome locationCicolChr04:18411559..18417362
RNA-Seq ExpressionCcUC04G063080
SyntenyCcUC04G063080
Gene Ontology termsGO:0000178 - exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606437.1 Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.3e-16791.74Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

XP_022995373.1 exosome complex component RRP4 homolog [Cucurbita maxima]2.8e-16691.44Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

XP_023533481.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo]1.2e-16691.44Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSL IS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

XP_038882864.1 exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]5.4e-17094.19Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQISLNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+LTV  YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG KFEGTF NQVQ+R YTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKEVERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

XP_038882865.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida]5.4e-17094.19Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQISLNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+LTV  YLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG KFEGTF NQVQ+R YTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKEVERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

TrEMBL top hitse value%identityAlignment
A0A1S3B5H2 exosome complex component RRP4 homolog isoform X11.1e-16090.21Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLNHTQKIRL+RA+ERL+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ+L VSPYL+KRRKQHFHHL+
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDPKED MIED V+  EQK  KFEGT    VQE  YTPL TRQNICRTANAIRVLS LGFI+TVEV+MEIV+LSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKEVERRS SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

A0A6J1EXY1 exosome complex component RRP4 homolog3.0e-16691.69Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKK
        HEMLGSEFC+LTAEKE ERR+ SKK
Subjt:  HEMLGSEFCILTAEKEVERRSLSKK

A0A6J1HGD9 exosome complex component RRP4 homolog isoform X18.7e-16692.05Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQISLN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLI GCNGFIWIGEHVDP EDMMIEDQVN SEQKGSKFEGTFGNQVQER YTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

A0A6J1HVC7 exosome complex component RRP4 homolog isoform X12.2e-16189.91Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQISLN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLNGEVVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRL+INYSQDAVLMLSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLI GCNGFI IGE VDP EDMMIEDQVN SEQKGSKFEGTFGNQVQER YTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS+S+NI+V
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

A0A6J1K7S0 exosome complex component RRP4 homolog1.3e-16691.44Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVT
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE
        EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ+LTVSPYLVKRRKQHFHHLE
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLE

Query:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV
        QYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGSKFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Subjt:  QYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV

Query:  HEMLGSEFCILTAEKEVERRSLSKKRG
        HEMLGSEFC+LTAEKE ERR+ SKKRG
Subjt:  HEMLGSEFCILTAEKEVERRSLSKKRG

SwissProt top hitse value%identityAlignment
Q09704 Exosome complex component rrp43.3e-4541.63Show/hide
Query:  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEND
        ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++DI   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D
Subjt:  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEEND

Query:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQ
        ++ AEV+    DG + +  RS KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H + +        V+I+  +    E  + N+
Subjt:  VICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQ

Query:  VQERE-YTPL-ATRQNICRTANAIRVL-----SILGFIITVEVVMEIVSLSISMNID
          E + YT L  +R +IC    A R L     SI  F  +  V   +  L++  N+D
Subjt:  VQERE-YTPL-ATRQNICRTANAIRVL-----SILGFIITVEVVMEIVSLSISMNID

Q13868 Exosome complex component RRP41.1e-4549.53Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     +      V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIWI    + KE+
Subjt:  GFIWIGEHVDPKED

Q2KID0 Exosome complex component RRP41.3e-4649.53Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL  AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWIGEHVDPKED
        GFIW+    + KED
Subjt:  GFIWIGEHVDPKED

Q8VBV3 Exosome complex component RRP42.3e-4650.23Show/hide
Query:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN
        ++RL +AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VERVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N
Subjt:  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDIN

Query:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN
           D+VL+LSSMNLP G  RRR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR+K HFH L   G  +ILG N
Subjt:  YSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCN

Query:  GFIWI---GEHVD
        GFIWI    EH D
Subjt:  GFIWI---GEHVD

Q9ZVT7 Exosome complex component RRP4 homolog3.8e-11865.75Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+ L+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQ+L V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID

Query:  VHEMLGSEFCILTAEKEVERRSLSKKR
        +H+MLGSEF ++ AE E ERR   +K+
Subjt:  VHEMLGSEFCILTAEKEVERRSLSKKR

Arabidopsis top hitse value%identityAlignment
AT1G03360.1 ribosomal RNA processing 42.7e-11965.75Show/hide
Query:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT
        MR LQ+ L+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV 
Subjt:  MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVT

Query:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHL
        EVA KRWR+++N++QD VLMLSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+GQ+L V PYLVKR K HFH++
Subjt:  EVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHL

Query:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID
        E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Subjt:  EQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID

Query:  VHEMLGSEFCILTAEKEVERRSLSKKR
        +H+MLGSEF ++ AE E ERR   +K+
Subjt:  VHEMLGSEFCILTAEKEVERRSLSKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTCCAAAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTAT
AGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAG
TCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGAT
ATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGA
AGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGGTGCTCACAG
TTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTT
GATCCAAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGAATATACTCC
ATTAGCAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTTGTAATGGAGATAGTTAGTCTAAGTA
TTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGCATTCTCACAGCAGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAAAGGGGGTGA
mRNA sequenceShow/hide mRNA sequence
AATAGAAAAAGAAACCTACTACAGCGTCAGTACCTTCTTCCTTCCTTCCCCTCTCATTCAAGCAGCCGTACTGTCGCCCGCCTGCTCAGTCTCCTTCTCCGGTGAGCCTC
CAGCAGCCACAGGCGGAAGGCAGCGACGACTGGAACCCACAACCACTCGAACGCCCAGCTCTGTCGTTGACGGCGGCTTACGTTCACTGAGCGCCACTTCAAGGCCGCCT
AGGCCTTTGCAGCATCGTTTCTTCTCCGTTCGAGACTCCCGCGCGAACAACAGGTTGTTCAACACGTTTTTGATGACTGTGTGGGTCTTGCAGCGGCGTTTCTGACCTAG
GATTTGCAAGTTCGGACGTTTTTGAACACCAACCAGCAAGGTACAGAGTATTTTCAGGAAGATTTGTTTTGGACTTCTTCGGAGTGATCGGTTAACATTTACGATAGATT
TTGGACTTCGAGGAAGTTGACATTTGTTCAAGAAAGTAAATTTTTGATTGAGAATTGCAGGATTGTCTATTGAGATATGAGAGGTTTACAGATTTCTTTGAATCATACCC
AGAAGATTCGGCTCCAAAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGAT
GGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGC
CAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTT
CTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGT
CTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGGTGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACA
CTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCAAAAGAGGATATGATGATAGAGGATCAAG
TTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGAATATACTCCATTAGCAACACGGCAGAATATATGCAGAACTGCA
AATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTTGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGG
TTCGGAGTTCTGCATTCTCACAGCAGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAAAGGGGGTGATGGTTTTGGAGAATTTTAGATTACCACCACTTGGTCTCTG
TAGTATTAAACAGTTTAGAATGCAATATTTGCTTAATTATTCTATAGTACGTGGTTTCATAAATGTCGAAGAATTACTTTTAGGATTTTACTATGTCATATTATTGGTTT
AGATTAGTACTTGACGAAACATAACTTTATTAGATTTAATATTTCTGCTGATGATTGTATCTTTATCATGCAT
Protein sequenceShow/hide protein sequence
MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD
INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHV
DPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDVHEMLGSEFCILTAEKEVERRSLSKKRG