; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G063340 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G063340
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein 5, chloroplastic
Genome locationCicolChr04:18836438..18838202
RNA-Seq ExpressionCcUC04G063340
SyntenyCcUC04G063340
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5985.99Show/hide
Query:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLL SNPLS SLHS  F  SPSPSPSCFPA  AT +SMLLMKP GFQPKHFNGV+LRNPSFVENT+  +VKAASEIDATGETDS+EP+P AEAK EDV
Subjt:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_004144312.1 50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus]8.2e-6088.31Show/hide
Query:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD
        +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGV+LRN SFVENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVD
Subjt:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]5.7e-6185.99Show/hide
Query:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGV+LRN SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDV
Subjt:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]6.3e-6084.91Show/hide
Query:  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTE
        MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGV+LRNPSFVENT+  +VKAASEIDATGETDS+EP+PPAEAK E
Subjt:  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]7.9e-6389.1Show/hide
Query:  AFLLYSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVP
        +FLL SNPLSTSLHSFPFS  PSPSPSCFPATSA PS MLLMKPIGFQPKHFNGV+L  PSFVEN   L+VKAASEIDA G+TDSSE QPPAEAK EDVP
Subjt:  AFLLYSNPLSTSLHSFPFS--PSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVP

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein4.0e-6088.31Show/hide
Query:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD
        +FLL SNPLSTS H   FS SPSPSCFP TSA PSSMLLMKPIGFQPKHFNGV+LRN SFVENT  LVVKAASE DATGETDSS+ QP AEAK EDVPVD
Subjt:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic4.2e-5483.12Show/hide
Query:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD
        +FLL SNPLSTS H     P     CFP TSA PSSMLLMKPIGFQPK FNGV+LRN  FVENT  LVVKAASE DATGE DSSE QP AEAK EDVPVD
Subjt:  AFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVD

Query:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  KLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.7e-6185.99Show/hide
Query:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLL SNPLSTSL+S PF  SPSPSPSCFP TSA PSS+LLM+P+GFQPK FNGV+LRN SFVENT  L+VKA SEID TGETDS+EPQPPAEAK EDV
Subjt:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like3.0e-6084.91Show/hide
Query:  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTE
        MAFLL SNPLS SLHS  F    SPSPSPSCFPA  A  +SMLLMKP GFQPKHFNGV+LRNPSFVENT+  +VKAASEIDATGETDS+EP+PPAEAK E
Subjt:  MAFLLYSNPLSTSLHSFPF----SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTE

Query:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  DVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like8.3e-5882.8Show/hide
Query:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV
        MAFLL SNPLS SLHS     SPSPSPSCFP   +  +SM LMKP GFQPKHFNGV+LRNPSFVENT+  +VKAASEID TGETDS+EP+P AEAK EDV
Subjt:  MAFLLYSNPLSTSLHSFPF--SPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDV

Query:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic6.4e-1543.66Show/hide
Query:  HSFPFSP-SPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERL
        +SF  +P + S S FP  +A P S +    IG       G ++  P   +     +  A++   A         +  ++ +++ V VDKLPLESKL+ER 
Subjt:  HSFPFSP-SPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERL

Query:  EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        E+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic3.2e-1456.04Show/hide
Query:  TMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        T++ +V AA+E  A  + D S      + +  ++ V  LPLESKLQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  TMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic4.9e-1550Show/hide
Query:  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQ
        SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKAA    A+G  D +EP+   E KT    VPVDKLPLESK  
Subjt:  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQ

Query:  ER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  ER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 53.5e-1650Show/hide
Query:  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQ
        SL S     S S S    + +  S +L +KP   + K  N V L   S   +   +VVKAA    A+G  D +EP+   E KT    VPVDKLPLESK  
Subjt:  SLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKT--EDVPVDKLPLESKLQ

Query:  ER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        +    LE + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  ER---LEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCTCCGTCTCCGTCGCCGTCATGTTTTCCAGCGACTTCTGCCACTCCGAGTTC
TATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCAACTTCGAAACCCCTCTTTTGTTGAAAATACAATGTTGTTAGTTGTCAAAGCTGCGT
CTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTGCAA
GAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGGCGATGGCCTCCATC
AAAGATGAAGAAGTTGAAGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
GTAGTGGGGGACTCCCAGACCAGAGAAAAACACCATGGCTTTTCTTCTCTACTCCAATCCCCTCTCCACCTCTCTCCATTCATTTCCCTTTTCTCCGTCTCCGTCGCCGT
CATGTTTTCCAGCGACTTCTGCCACTCCGAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTCAATGGAGTCCAACTTCGAAACCCCTCTTTTGTT
GAAAATACAATGTTGTTAGTTGTCAAAGCTGCGTCTGAGATTGATGCTACAGGAGAAACTGACAGTAGTGAACCGCAGCCCCCTGCAGAAGCTAAAACGGAGGATGTTCC
AGTTGATAAACTTCCATTAGAATCAAAGTTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAGC
GCCATTTGAGGAAGAAGGGGCGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGAAAATCTTTAGCTCCTTCAATTCAATTCTTGCAGATTTAGAGGTGACCC
CATTTCTCCTCATTGCTTCCAATTTACTCTGTCTAATTTCTTCATACTTTCAAGGAAATGTACTTGCTTTCTTTATATATCTGAAAGAATCCAGTGAGTAATGAAATGTG
CAAATTGTGCTTAGTTTTGAATGACTAATGCCTAATGGTGAGTTGAAAGATAACTGTACAGTTCAACAAACTGAATACTTGATTTAGATTTTTATCTGTAGATCCCCTGA
TCTCTTGA
Protein sequenceShow/hide protein sequence
MAFLLYSNPLSTSLHSFPFSPSPSPSCFPATSATPSSMLLMKPIGFQPKHFNGVQLRNPSFVENTMLLVVKAASEIDATGETDSSEPQPPAEAKTEDVPVDKLPLESKLQ
ERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV