; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G065540 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G065540
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA topoisomerase 4 subunit A
Genome locationCicolChr04:22528575..22533255
RNA-Seq ExpressionCcUC04G065540
SyntenyCcUC04G065540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEY94182.1 hypothetical protein [Tanacetum cinerariifolium]6.1e-0644.74Show/hide
Query:  LITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHR
        L TWI+  ESD+SPA  G+ D V  L + +IELL V+  +I+ +AL+Q+++V+S++M  MI   N+  VLK +L+R
Subjt:  LITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHR

PON36892.1 hypothetical protein PanWU01x14_324450, partial [Parasponia andersonii]2.1e-0636.26Show/hide
Query:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR
        WIV  E D  P+A G+ + +P  R+NK+E L ++  +I+PE+ T + +++ ++M R++L R + SVL++ LHRR+  Q ++L  + R++ R
Subjt:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR

PON37108.1 hypothetical protein PanWU01x14_323040, partial [Parasponia andersonii]1.1e-0738.95Show/hide
Query:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQRIIQS
        WI+ LESDD P+A+ D + + +L +NK+E L     V+I +AL Q M+V++V+M R++   ++SSVL++NLH  + LQ   L    R+  R++++
Subjt:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQRIIQS

PON63693.1 hypothetical protein TorRG33x02_275550, partial [Trema orientale]5.2e-0536.05Show/hide
Query:  ESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR
        E D  P+A G+ + +P  R+NK+E L ++  +I+PE+ T + E++ ++M R++L R++ SVL++ LHRR+  Q ++L  + R++ R
Subjt:  ESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR

TrEMBL top hitse value%identityAlignment
A0A0A9KGA8 LAC121.2e-0437.97Show/hide
Query:  MASPHEKDILITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVL
        M  PH      TW+V  E+D  PAA G  DGV    +++++L R++ RV + E LT ++EV++V++QR+ L   ++ VL
Subjt:  MASPHEKDILITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVL

A0A1D1YYB5 DNA topoisomerase 4 subunit A (Fragment)1.6e-0439.51Show/hide
Query:  KDILITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRI
        K + +TW+VG E D  P   GDGDGVP   V ++E   V   V + +AL    EV++VE+  ++L R++  VL+ +LHR +
Subjt:  KDILITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRI

A0A2P5AK20 Uncharacterized protein (Fragment)1.0e-0636.26Show/hide
Query:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR
        WIV  E D  P+A G+ + +P  R+NK+E L ++  +I+PE+ T + +++ ++M R++L R + SVL++ LHRR+  Q ++L  + R++ R
Subjt:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR

A0A2P5AKN1 Uncharacterized protein (Fragment)5.4e-0838.95Show/hide
Query:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQRIIQS
        WI+ LESDD P+A+ D + + +L +NK+E L     V+I +AL Q M+V++V+M R++   ++SSVL++NLH  + LQ   L    R+  R++++
Subjt:  WIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQRIIQS

A0A2P5CRN2 Uncharacterized protein (Fragment)2.5e-0536.05Show/hide
Query:  ESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR
        E D  P+A G+ + +P  R+NK+E L ++  +I+PE+ T + E++ ++M R++L R++ SVL++ LHRR+  Q ++L  + R++ R
Subjt:  ESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGTCCCCACGAAAAAGATATATTGATCACCTGGATTGTTGGCTTGGAATCGGATGACAGCCCAGCCGCCGACGGGGACGGCGATGGTGTTCCGGATTTG
CGGGTTAACAAAATTGAACTTCTTCGGGTCATGAATCGGGTCATAATTCCCGAAGCCTTGACCCAAAACATGGAAGTTAAATCCGTGGAGATGCAGCGGATGATT
CTCCTTCGCAATGAAAGCAGTGTTCTGAAAAGCAATCTCCACCGTCGAATTAAACTTCAATTTCTTCACCTTCGTAGCCTTAGGCGCAAAAATCAAAGAATTATC
CAATCTTAA
mRNA sequenceShow/hide mRNA sequence
CAACTATAAGATATAATACATAATTTTCTTCAAATATGGAGAGGAACTTTGTCGATGGTATTCCTAGCATTTGGGAAGATCGGACGGTGGTGGAGGCAACCTCGT
CGACGGAGTTGGTCCATTTTCGACCTCAAAACCCATGGCTAGTCCCCACGAAAAAGATATATTGATCACCTGGATTGTTGGCTTGGAATCGGATGACAGCCCAGC
CGCCGACGGGGACGGCGATGGTGTTCCGGATTTGCGGGTTAACAAAATTGAACTTCTTCGGGTCATGAATCGGGTCATAATTCCCGAAGCCTTGACCCAAAACAT
GGAAGTTAAATCCGTGGAGATGCAGCGGATGATTCTCCTTCGCAATGAAAGCAGTGTTCTGAAAAGCAATCTCCACCGTCGAATTAAACTTCAATTTCTTCACCT
TCGTAGCCTTAGGCGCAAAAATCAAAGAATTATCCAATCTTAAACTCGAATTCGTGTAGTCAAATTTCACCGCCGGCTCATCCGGGAAATCTCTACTATAAACTC
CCTCCACCTTATGAAAATACGCTTCCAACATCGACAATCCGGCGTCGTTTGGTATCACAAACGACACGTTATTCATACTCGCCGATAACCGCTGCCCGTTCGGCC
CGCCGCACGTGCTGCCATTAGTTAGCCCACACGTGGCTAGATTTAAACCAAACGTAACAAACATGTGCTTGTCCACGTGGCGAGGGACGGGGACCCAGTGGCGGG
CCCCAGCCAGAGCGGTTATGTTGGTGTAGAATTTGTGAGCGGTTGGGGTGTCGTTGAAAGCTGGAAGGATTGGCATTATCGGTGCGGCGGAGGGGGATGCGCCGT
CGTAGACGACGACTGCGCGCGTGGTGGTGTTTGGGAAGCCTATTTGGGGTTGGGTGTCGGCGTATGGATGCGCTGCCATGTAGTATGAACCGAGGGGTTGGTTAG
CTTTGACGAGGACGTCGGTAGTTTGGCCGGGAGCTAGGACGATGACGTCGGTGACGTAAGGGTCGGTGTAGGCGGCGTCGACGGCGACGACGGTGAAATTGTGAT
TGGCTAACTTGAAGAAGAGTTGGTTATTGAGTGCAGCGTTGATTACTTGAAGCAAATATGTTTTTCGAGAGAATTTACTTACGATTTTGGGAGCAAGGGTAAAGA
TTTCCCGGGAGTCCATTAATGGTGTAGGCGTCAGAGGCATTAGGGCCGCGACCAGTGGCGAGGCCTTCCTCTTCGACGTCAACAACGTTGGCATTCCACCACTCT
CCCAACAATATTGGAACCTTCTTGTAGGGGTTTGGGTACGGCAGTGGGTGATTAGATTTGGGTTGGATTAGAAGGGCGCCGTGGACGGTGGCGCGTAGCCAAGAC
GAGTGGGCGTGCCACCATAGAGTTCCTTCTTGTCCTTTGATATTGAATCTATATGTGTACTTTTTGCCCGGTCGTATCGGACATTGGGTTATATTTTCCGGCCCG
TCTGCCCACCCGCTTAGCAGCTGGAATACTCCATGCCTGAGCGTTTCTCAATATCTCGTTAAATTACAACTAAAATTAATATTTGTTTTAAATAAACTAAAAATT
ATATAGTTATTAAGTGAAATGTAAAGGATAGTTTGTCTTTTGTGTTTTAGTTGGGATGTTCGAATTTATGAAAGGTAAAGAAATGATTTTAAACCTTTTGATTTG
AAATTCAATACATGATTTTAAACATTTGAAAGAAGACATATTTGAAATGAATGTATTTAAAATTTTGTGTTTGAATGTTAATTGAAAAAGAAAGGAAAGTTAAAC
ATTTTAATAACTGAACTTTTTAAATGTGATTTCCTAGTCATTTAGTTAATACATTTCCTACGTAGATATAACAATTTTAGATTTTAAATCATTTATCTTTCTTGC
AATAACATAGATTAAAAATTAGTCAATTACCAATGAATGGTTAAATCATAGGGAGAGTTGTTGGAAACGTGGACGACCAGAATGTCGTCATCCTGAACATGAATG
GTTGGGCCGGGATATTCACCGTTGACTGCCGTTATCACTTGGTCACGACAAAGCCGTCGAATGGTCATGTCTTCCACCTACAGGCAGAGAGAGAGCGAACCTTTG
CTGTTTAGTTTTTTTAGTTGAAATAGAAAGAAAGAATAAAAATATATTGCCAAAAGTGAGCACAGCTTAACTAGCATATGGAAGTGTTAGCAATTAAGAAGTTTA
TGGTTTTAATTCTCCTATCTTTATTATACTAAAAAAGAAAACGAT
Protein sequenceShow/hide protein sequence
MASPHEKDILITWIVGLESDDSPAADGDGDGVPDLRVNKIELLRVMNRVIIPEALTQNMEVKSVEMQRMILLRNESSVLKSNLHRRIKLQFLHLRSLRRKNQRII
QS