; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G065590 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G065590
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationCicolChr04:22584084..22588800
RNA-Seq ExpressionCcUC04G065590
SyntenyCcUC04G065590
Gene Ontology termsGO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]4.6e-6796.3Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTCVEIGDCC HLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPASSSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]6.2e-6494.07Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

XP_004147903.1 signal recognition particle 19 kDa protein [Cucumis sativus]4.6e-6796.3Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTCVEIGDCC HLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPASSSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]2.1e-6494.07Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]3.3e-6595.56Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein3.0e-6494.07Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein1.0e-6494.07Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein8.8e-6493.38Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGE+PNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ+MLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSK-GKSGRKKK
        AELVPRHPGRTKKQEPA SSSTAGPSK GK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSK-GKSGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein5.1e-6493.33Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYP+YINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGR KKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein3.9e-6494.07Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRW VLYPIYINSKKTIAEGRRIGVSK CENPTC EIGDCCSHLKLPF IEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        AELVPRHPGR KKQEPA SSSTAGPSKGK GRKKK
Subjt:  AELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein1.4e-2148.85Show/hide
Query:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP
        R+  +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML  AE++P
Subjt:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSSTAGP-SKGKSGRKKK
        +   RT+K   A  S   G  SK   G+KKK
Subjt:  RHPGRTKKQEPASSSSTAGP-SKGKSGRKKK

P49964 Signal recognition particle 19 kDa protein6.5e-4871.32Show/hide
Query:  NIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   K C +PTCVEI DCCSHLK+P  IE+DKAYPRDF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+
Subjt:  NIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPR

Query:  HPGRTKKQEPASSSSTAGPSKGKSGRKKK
        H GRTKKQEPA +SSTAG SKGK G+KKK
Subjt:  HPGRTKKQEPASSSSTAGPSKGKSGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein1.4e-2148.85Show/hide
Query:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP
        R+  +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML  AE++P
Subjt:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSSTAGP-SKGKSGRKKK
        +   RT+K   A  S   G  SK   G+KKK
Subjt:  RHPGRTKKQEPASSSSTAGP-SKGKSGRKKK

Q943Z6 Signal recognition particle 19 kDa protein4.5e-4967.59Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+W V+YP+YINSKKT+AEGRRI VSK CENP C+EI DCC HLKLP  +EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK
        AELVPRHP R         KKQEP +++ST+G S   GK G+KK+
Subjt:  AELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein3.0e-2148.48Show/hide
Query:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP
        R+  +YP Y+N+KKTIAEGRRI +SK  ENPT  EI D CS + L   +E +K Y     RD   RGRVRV LK+EDG+L      SRK +ML +AE++P
Subjt:  RWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYP----RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASS--SSTAGPSKGKSGRKKK
        +   RT+K   A        G  KGK G+KKK
Subjt:  RHPGRTKKQEPASS--SSTAGPSKGKSGRKKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative3.2e-5067.59Show/hide
Query:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+W V+YP+YINSKKT+AEGRRI VSK CENP C+EI DCC HLKLP  +EIDKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK
        AELVPRHP R         KKQEP +++ST+G S   GK G+KK+
Subjt:  AELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGAAATTCCCAACATAAAGAGATGGGCAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGGATG
TGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAG
TGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGG
ACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
TGACTCTTCTATCTGTCTCTCAGTTTCACTCTCTCTCATCTATCCGTCGCACCTCTCTCTCTCATCTCTCCGTCTCACCTCTCTCTCTCTGTTCAATCTCACTGACAGTC
ACTCTCTCTCGTCTCCCCCACCCCCTTTCAGTTTCAGTCACAGCCACACCACACTACCACAGTCTCTCTCTGATCTCCATTTCTCTCCGACAGTCACGGTCTCGGCTGTT
CTTCAGTGTATGCGGAATTTGGTTAGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGCAGTATTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAA
GGAAGACGTATAGGTGTTAGCAAAGGATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCAGTCATCTCAAACTGCCTTTTACTATTGAGATTGATAAAGCTTA
TCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGTGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAG
CCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGAAGAAAGAAGAAATAGTTG
CATTTAGGTAATTGCAAGAACCAAATTGTTATTGACCAGGCAAGCGGTTTCATTTTCACGTCTCATTTATTATTTCTTAACGACCTTTGAGTATTGGTTTTCTGCCCTGG
CCCCCATCCGAAATGAAAACTGGACGATGGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCTTGGAGTTTTACTGAGATAAAGTTGCTGATAGGAGAAAAGGATGGT
GGATGAGAATTAAGTTGAATGATACACCCTTTTGCTTAAATCCTTTGAGATTGGAGGTGAAGCAATCCATCTATGAACATGATTTAGAGGTCTGGAGATTGAAAAATGTG
GAATTTTCTCAATAATTTGCTGCCATGGTCAGAGTCTGGAAGTATGTAAATTTTGAGATTTTTGCTCATAATCTTGTTAATAACAAGACGTTGAAACTCTTTACAGGCTG
CTTCAGAACTTTGGAAATCATAGGTTTTGAAAAGGTCAAATTTTTCATCATCGGATTGTTCAACATTAGGAGGTGGTGCTGTTCATGGTGCACAGATGCATTCTTTTATC
AAATTGAATTTCTAGTGGGTTATTTTACTCCCAAGTTTTTTGAGTTTATATTTTTATGACTACAGTTGAGCGTTAGGGCTTGACAGTCTAATGTTAGAATATTTTAGTCT
CTGTGCCTTGGATTAATTCATAG
Protein sequenceShow/hide protein sequence
MDGEIPNIKRWAVLYPIYINSKKTIAEGRRIGVSKGCENPTCVEIGDCCSHLKLPFTIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGR
TKKQEPASSSSTAGPSKGKSGRKKK