CuGenDBv2

Gene ID	CcUC04G066440
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNase H domain-containing protein
Genome location	CicolChr04:23382363..23382848
RNA-Seq Expression	CcUC04G066440
Synteny	CcUC04G066440
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7586300.1 Reverse transcriptase zinc-binding domain [Arabidopsis thaliana x Arabidopsis arenosa]

1.1e-06

33.85

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Query:  VLSNVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLS
        V  N D  W      +G   +LRDY G++  +  R L      +  ++ A+   +L        K+I ESD +QVIS +  E   +   +  L++IR L 
Subjt:  VLSNVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLS

Query:  RSFESVQFLFCNRTCNGVAADRVAKVACSL
        + FE V+F F  R  NGV ADR+AK + SL
Subjt:  RSFESVQFLFCNRTCNGVAADRVAKVACSL

OMO54692.1 reverse transcriptase [Corchorus capsularis]

2.0e-08

37.1

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        NVDA +       G  A++RD+NG +   +T+ L    D   A+I AI  GL  A  +  Q+ +VESD    ISAI   ++      C ++EIR+L+ SF
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVAADRVAKVA
        ES++F   NR  N   A  +AK A
Subjt:  ESVQFLFCNRTCNGVAADRVAKVA

OMO64624.1 reverse transcriptase [Corchorus capsularis]

9.9e-08

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Query:  NVDATWKNVPPSTGWNAILRDYNGKI-CGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRS
        NVDA + N     G  A+ RD NG++ C V+ +   +  D L A+I  +C G+L A  +     ++ESD   V+ A+  +       DC LEEIRDL+  
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKI-CGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRS

Query:  FESVQFLFCNRTCNGVAADRVAKVA
        F+S+ F+   R  N V A  +AK A
Subjt:  FESVQFLFCNRTCNGVAADRVAKVA

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]

1.4e-06

34.68

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        NVD   K     T    + R+  G+I   ++R ++  +DPL+A+ LA+ +GL  A     Q++  ESD  Q+I+ +T +      ++ WLE+IR L+R+F
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVAADRVAKVA
            FL   R+ N  AA RVA  A
Subjt:  ESVQFLFCNRTCNGVAADRVAKVA

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]

5.8e-08

37.6

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVIS---AITCENSQLRCADCWLEEIRDLS
        NVDA WK  P S+G++AI+RD  G +  V    +D  Y P LA+   +  GL        +KIIV+SD    I     I   +S +R    WLEEI ++S
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVIS---AITCENSQLRCADCWLEEIRDLS

Query:  RSFESVQFLFCNRTCNGVAADRVAK
          F  + F +  R  N + AD VAK
Subjt:  RSFESVQFLFCNRTCNGVAADRVAK

TrEMBL top hits

e value

%identity

Alignment

A0A1R3G9C4 Reverse transcriptase

9.6e-09

37.1

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        NVDA +       G  A++RD+NG +   +T+ L    D   A+I AI  GL  A  +  Q+ +VESD    ISAI   ++      C ++EIR+L+ SF
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVAADRVAKVA
        ES++F   NR  N   A  +AK A
Subjt:  ESVQFLFCNRTCNGVAADRVAKVA

A0A1R3H2R0 Reverse transcriptase

4.8e-08

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Query:  NVDATWKNVPPSTGWNAILRDYNGKI-CGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRS
        NVDA + N     G  A+ RD NG++ C V+ +   +  D L A+I  +C G+L A  +     ++ESD   V+ A+  +       DC LEEIRDL+  
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKI-CGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRS

Query:  FESVQFLFCNRTCNGVAADRVAKVA
        F+S+ F+   R  N V A  +AK A
Subjt:  FESVQFLFCNRTCNGVAADRVAKVA

A0A1R3HQR7 Ribonuclease H

1.5e-06

34.68

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        N DA +       G  A+LRD+ G++     + +    DPL A + AI  GL  A S+     ++ESD    I+AI  ++S+    DC +  IRDL+R F
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVAADRVAKVA
          V F    R  N   A  VAK A
Subjt:  ESVQFLFCNRTCNGVAADRVAKVA

A0A5B7A5C8 Uncharacterized protein

2.6e-06

33.62

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        N+D +W     + G   ++RD+ G++ G   + L        AK +AI  G+LFA     QK++VE D   VISAI C +  L      L++I+D    F
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVA
         S +     R+ NGVA
Subjt:  ESVQFLFCNRTCNGVA

A0A6J1CNR4 uncharacterized protein LOC111012950

6.9e-07

34.68

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Query:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF
        NVD   K     T    + R+  G+I   ++R ++  +DPL+A+ LA+ +GL  A     Q++  ESD  Q+I+ +T +      ++ WLE+IR L+R+F
Subjt:  NVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSRSF

Query:  ESVQFLFCNRTCNGVAADRVAKVA
            FL   R+ N  AA RVA  A
Subjt:  ESVQFLFCNRTCNGVAADRVAKVA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

9.2e-04

28.12

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Query:  NVDATW--KNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSR
        N DA +  +N+  +  W  I+R+++G      +  LD    PL A+  A+   L     +   ++I+E D E + + ++  +S    A+  L++IR  ++
Subjt:  NVDATW--KNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAITCENSQLRCADCWLEEIRDLSR

Query:  SFESVQFLFCNRTCNGVAADRVAKVACS
         F +VQF F  R  N VA + +AK+ C+
Subjt:  SFESVQFLFCNRTCNGVAADRVAKVACS

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

6.4e-05

29.45

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Query:  QFLVTELYLRSFGQNLRRVLSNVDATWKNVPPSTGWNAILR---DYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAI
        +F    L   +   +L RV    DA WK+     G+  ++R   +        + R + L   PL+A+ +A+   L +A S    K+ + SD +Q+I+AI
Subjt:  QFLVTELYLRSFGQNLRRVLSNVDATWKNVPPSTGWNAILR---DYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVISAI

Query:  TCENSQLRCADCWLEEIRDLSRSFESVQFLFCNRTCNGVAADRVAK
        T E+         + +I +LS  F  V F F  R+ N V AD +AK
Subjt:  TCENSQLRCADCWLEEIRDLSRSFESVQFLFCNRTCNGVAADRVAK

Sequences

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CDS sequence

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ATGCTACTGCAAGGAATAGAGAGAATGTCCCTCCAATTTCTGGTAACCGAGTTGTATCTCAGAAGTTTTGGTCAAAACCTCCGGAGGGTTTTATCAAATGTTGAT
GCTACTTGGAAGAACGTCCCGCCTTCTACAGGTTGGAATGCTATTCTGAGGGACTACAACGGAAAAATATGTGGTGTTTCAACCCGTTATCTGGATCTTGACTAC
GATCCCCTGCTGGCGAAAATTCTAGCTATCTGCGATGGCCTCCTCTTTGCTTTGTCCCAATGTTGCCAAAAGATTATCGTGGAATCTGATTTTGAGCAAGTTATA
AGTGCAATTACTTGCGAAAACTCTCAACTAAGGTGTGCTGATTGTTGGCTGGAAGAAATCAGAGATTTGTCAAGAAGTTTTGAATCTGTTCAATTTCTGTTTTGT
AATCGTACTTGTAATGGGGTGGCGGCTGACAGGGTAGCAAAAGTAGCTTGCAGTTTGAACACTTAG

mRNA sequence

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Protein sequence

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MLLQGIERMSLQFLVTELYLRSFGQNLRRVLSNVDATWKNVPPSTGWNAILRDYNGKICGVSTRYLDLDYDPLLAKILAICDGLLFALSQCCQKIIVESDFEQVI
SAITCENSQLRCADCWLEEIRDLSRSFESVQFLFCNRTCNGVAADRVAKVACSLNT

CcUC04G066440 (gene) of Watermelon (PI 537277) v1 genome