CuGenDBv2

Gene ID	CcUC04G066930
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	CicolChr04:23784499..23785722
RNA-Seq Expression	CcUC04G066930
Synteny	CcUC04G066930
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

2.8e-200

93.12

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLK+AEQVLDVLFDDYADY+ P + KT+ DA
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQ RPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

1.6e-203

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADY+ P +VKT+  A
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQ RPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

3.2e-204

93.14

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LD+TPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADYR P +VKTKDD 
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP Q RPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

2.7e-195

90.2

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQS+PST LDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+L AFANKLKDAEQVLDVLFDDYADY+   +VKT DD 
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL
        ENESLC STTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEPPAP PTDANPL
Subjt:  ENESLC-STTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL

Query:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEPQ R NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

3.6e-208

94.59

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADY+ P +VK KDDA
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEPPAP PTDANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP MDSLPVTRVDEPQ RPNA PGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

1.3e-200

93.12

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLK+AEQVLDVLFDDYADY+ P + KT+ DA
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPL 
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
          AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQ RPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

7.6e-204

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADY+ P +VKT+  A
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQ RPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

7.6e-204

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LDSTPS+SKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADY+ P +VKT+  A
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAP   DANPLS
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
        N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LP MDSLPVTRVDEPQ RPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

1.5e-204

93.14

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQSSPST LD+TPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA EIRAKDA+L AFANKLKDAEQVLDVLFDDYADYR P +VKTKDD 
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS
        EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAP PTDANPL+
Subjt:  ENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLS

Query:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEP Q RPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSD
Subjt:  NVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEP-QWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

5.5e-194

89.71

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA
         SQTQS+PST LDSTPSTSKEILSLFNVLQTQLFEAV+ELQEIL+LQDSKQKIA E+RAKDA+L AFANKLKDAEQVLDVLFDDYADY+   +VKT DD 
Subjt:  ASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDA

Query:  ENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL
        ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAP PTDANPL
Subjt:  ENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPL

Query:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD
        + +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLP +DSLPV RVDEPQ R NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  SNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

1.6e-04

31.02

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Query:  STPSTSKEILSLFNVL--QTQLFE-AVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLD-VLFDDYADYRCPH-----------QVKTKD
        S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  LKD E  L+  L  D  +    +            +K  D
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLD-VLFDDYADYRCPH-----------QVKTKD

Query:  DAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
        DA +       V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  DAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

3.5e-137

64.75

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI++KD+SL AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVL

Query:  DVLFDDYADYRCPHQVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY+DYR P + K ++D E+     S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYADYRCPHQVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-WRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LP ++S+   R ++ Q  RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-WRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

2.5e-138

64.75

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV+ELQEIL+LQD+KQK+A EI++KD+SL AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLASQTQSSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVL

Query:  DVLFDDYADYRCPHQVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA
        D+L DDY+DYR P + K ++D E+     S  STTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK 
Subjt:  DVLFDDYADYRCPHQVKTKDDAEN----ESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKA

Query:  VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-WRPNALPGLHKP
        VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LP ++S+   R ++ Q  RP+   GLH+P
Subjt:  VESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQ-WRPNALPGLHKP

Query:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTTCAATCCCCAGCTAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCCACCCCACCCAAATTGCCCCCTTCTCAA
CAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACTCCCTCCTCCACCCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAA
ATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGCGGTTCTCTTCCCACTTTTCTTGCTTCTCAAACCCAG
TCCTCACCCTCTACCTCTCTTGATTCTACTCCGTCTACTTCGAAAGAAATTTTGTCACTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTTCCGAGCTT
CAGGAGATTCTTAATCTTCAAGACTCTAAGCAGAAGATTGCTAATGAGATACGTGCTAAAGATGCTAGTCTTCATGCTTTTGCTAATAAGCTCAAGGATGCCGAG
CAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCGATGTCCTCATCAGGTTAAAACAAAGGATGATGCTGAAAATGAGTCTTTATGTTCGACTACAGTT
GCATCCCAGTTGAGATTATCTGATATATTGTCGTATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGG
GCACTGCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAA
ACTATTGAGCCAATGATTGAGCCTCCAGCTCCCGCGCCAACAGATGCTAATCCTCTTTCTAATGTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTC
CCATCTGGTTGGAAACCCGGAATGCCTGTCGAGTTACCTAGAGACTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCAGTGCCATTACCCTCAATGGAC
TCTCTTCCTGTTACTAGAGTGGATGAGCCACAATGGAGGCCTAATGCTCTTCCAGGATTGCACAAACCCCCTGAGCCAATTCAAGTTAGGCATGTTCAATTGGAT
ATTCTTGATCAAGATGATGATAGTAGTGATTACACCAGTGATGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLASQTQ
SSPSTSLDSTPSTSKEILSLFNVLQTQLFEAVSELQEILNLQDSKQKIANEIRAKDASLHAFANKLKDAEQVLDVLFDDYADYRCPHQVKTKDDAENESLCSTTV
ASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPAPTDANPLSNVAAIQGLLPPNITV
PSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPSMDSLPVTRVDEPQWRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD

CcUC04G066930 (gene) of Watermelon (PI 537277) v1 genome