; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G070140 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G070140
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionHTH-type transcriptional regulator protein ptxE
Genome locationCicolChr04:26916669..26917133
RNA-Seq ExpressionCcUC04G070140
SyntenyCcUC04G070140
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141948.1 uncharacterized protein LOC101203564 [Cucumis sativus]7.1e-7293.51Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+DDEELQLGQLYFALPL+RLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKC GG+KC HRRRSVSPVVFTV ELKTRKR AAGRGGAGGR+KFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

XP_008440178.1 PREDICTED: uncharacterized protein LOC103484721 [Cucumis melo]9.3e-7292.86Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+DDEELQ+GQLYFALPL+RL+QPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKC GG+KC HRRRSVSPVVFTV ELKTRKR AAGRGGAGGR+KFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

XP_022963140.1 uncharacterized protein LOC111463438 [Cucurbita moschata]3.3e-6990.91Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLIL+DGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+D+EELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKCG G+KCSHRRRSVSP+VFTV ELKTRKR +AGR GAGGR+KFAANL AIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

XP_023518464.1 uncharacterized protein LOC111781952 [Cucurbita pepo subsp. pepo]5.1e-7092.86Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLIL+DGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKCG G+KCSHRRRSVSPVVFTV ELKTRKR +AGR GAGGR KFAANL AIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

XP_038883003.1 uncharacterized protein LOC120074082 [Benincasa hispida]1.3e-7396.1Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQ NPSCFICNSDEMDFDDAL AISDDEELQLGQLYFALPL+RLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKCGGG+KCSHRRRSVSPVVFTV ELKTRKR AAGRGGAGGRRKFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KJB4 Uncharacterized protein3.4e-7293.51Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+DDEELQLGQLYFALPL+RLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKC GG+KC HRRRSVSPVVFTV ELKTRKR AAGRGGAGGR+KFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

A0A1S3B0H3 uncharacterized protein LOC1034847214.5e-7292.86Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+DDEELQ+GQLYFALPL+RL+QPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKC GG+KC HRRRSVSPVVFTV ELKTRKR AAGRGGAGGR+KFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

A0A5D3CRH4 HTH-type transcriptional regulator protein ptxE4.5e-7292.86Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+DDEELQ+GQLYFALPL+RL+QPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKC GG+KC HRRRSVSPVVFTV ELKTRKR AAGRGGAGGR+KFAANLMAIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

A0A6J1HH54 uncharacterized protein LOC1114634381.6e-6990.91Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLIL+DGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDAL AI+D+EELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKCG G+KCSHRRRSVSP+VFTV ELKTRKR +AGR GAGGR+KFAANL AIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

A0A6J1KPP1 uncharacterized protein LOC1114971507.9e-6989.61Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES AVATAKLIL+DG+LQEFSYPVKVSY+LQKNPSCFICNSDEMDFDDAL AISD+EELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        MKCG G+KCSHRRRSVSPVVF + ELKTRKR +AGR GAGGR KFAANL AIPE
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76600.1 unknown protein1.2e-1637.2Show/hide
Query:  MGICSSSES----AAVATAKLILHDGSLQEFSYPVKVSYVLQ----------KNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQA
        MG+C S       ++  TAK++  +G L+E+  PV  S VL+           + S F+CNSD + +DD + AI  DE LQ  Q+YF LP+S+ +  L A
Subjt:  MGICSSSES----AAVATAKLILHDGSLQEFSYPVKVSYVLQ----------KNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQA

Query:  EEMAALAVKANSALMKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLM
         +MAALAVKA+ A+ K  G +    R   +SPVV          R AA     GG    A N+M
Subjt:  EEMAALAVKANSALMKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLM

AT2G23690.1 unknown protein7.1e-4663.41Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSS ES  VATAKLILHDG + EF+ PVKV YVLQKNP CFICNSD+MDFD+ + AIS DEE QLGQLYFALPLS L   L+AEEMAALAVKA+SAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGG---EKCSHRRRSVSPVVFTV-------AELKTRKRAAAGRGGAGGRRKFAANLMAIPE
        M+ GG    +KC  RR+ VSPV+F+        A  +TR     G GG  GRRK+AA L  I E
Subjt:  MKCGGG---EKCSHRRRSVSPVVFTV-------AELKTRKRAAAGRGGAGGRRKFAANLMAIPE

AT3G50800.1 unknown protein1.9e-3556.13Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MG C+S ES    TAKLIL DG+LQEFS PVKV  +LQKNP+ F+CNSD+MDFDDA+LA+   E+L+ G+LYF LPL+ L  PL+A+EMAALAVKA+SAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAG-GRRKFAANLMAIPE
         K GGG   S+    V      V  +K       G GG G GRRKF A L +I E
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAG-GRRKFAANLMAIPE

AT4G37240.1 unknown protein9.0e-4165.31Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MGICSSSES  VATAKLIL DG + EF+ PVKV YVL K P CFICNSD+MDFDDA+ AIS DEELQLGQ+YFALPL  L+QPL+AEEMAALAVKA+SAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGR---GGAGGRRK
        M+ GGG     RR+ V P+V      K R R  +G    G   GRRK
Subjt:  MKCGGGEKCSHRRRSVSPVVFTVAELKTRKRAAAGR---GGAGGRRK

AT5G66580.1 unknown protein5.7e-3555.06Show/hide
Query:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL
        MG C+S ES    +AKLIL DG+LQEFS PVKV  +LQKNP+ F+CNSDEMDFDDA+ A++ +EEL+ GQLYF LPL+ L  PL+AEEMAALAVKA+SAL
Subjt:  MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSAL

Query:  MKCGG-GEKCSHRRRSVSPVVF---TVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE
         K GG G        + S   +    +A +KT      GRG   G+R+F ANL  I E
Subjt:  MKCGG-GEKCSHRRRSVSPVVF---TVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATTTGCAGTTCTTCGGAATCTGCCGCCGTTGCCACCGCTAAGTTGATCCTTCACGACGGAAGTCTGCAGGAATTTTCGTATCCGGTTAAGGTTTCGTAT
GTTCTTCAAAAGAATCCGTCGTGCTTTATATGCAACTCCGACGAGATGGATTTCGACGATGCCTTGTTGGCCATTAGCGACGACGAGGAGCTTCAACTCGGACAG
CTTTATTTTGCGCTGCCGTTGAGTAGGCTGAAGCAGCCGCTTCAGGCCGAGGAAATGGCCGCATTGGCTGTCAAGGCTAACTCTGCGCTAATGAAATGTGGCGGC
GGAGAGAAATGTAGCCACCGCCGGAGATCGGTGTCTCCGGTGGTTTTCACGGTTGCGGAACTCAAGACTCGTAAACGAGCGGCCGCCGGCCGTGGTGGCGCCGGT
GGAAGAAGAAAGTTCGCGGCGAATTTGATGGCGATTCCTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTATTTGCAGTTCTTCGGAATCTGCCGCCGTTGCCACCGCTAAGTTGATCCTTCACGACGGAAGTCTGCAGGAATTTTCGTATCCGGTTAAGGTTTCGTAT
GTTCTTCAAAAGAATCCGTCGTGCTTTATATGCAACTCCGACGAGATGGATTTCGACGATGCCTTGTTGGCCATTAGCGACGACGAGGAGCTTCAACTCGGACAG
CTTTATTTTGCGCTGCCGTTGAGTAGGCTGAAGCAGCCGCTTCAGGCCGAGGAAATGGCCGCATTGGCTGTCAAGGCTAACTCTGCGCTAATGAAATGTGGCGGC
GGAGAGAAATGTAGCCACCGCCGGAGATCGGTGTCTCCGGTGGTTTTCACGGTTGCGGAACTCAAGACTCGTAAACGAGCGGCCGCCGGCCGTGGTGGCGCCGGT
GGAAGAAGAAAGTTCGCGGCGAATTTGATGGCGATTCCTGAGTAG
Protein sequenceShow/hide protein sequence
MGICSSSESAAVATAKLILHDGSLQEFSYPVKVSYVLQKNPSCFICNSDEMDFDDALLAISDDEELQLGQLYFALPLSRLKQPLQAEEMAALAVKANSALMKCGG
GEKCSHRRRSVSPVVFTVAELKTRKRAAAGRGGAGGRRKFAANLMAIPE