CuGenDBv2

Gene ID	CcUC04G070240
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	CicolChr04:27004566..27005988
RNA-Seq Expression	CcUC04G070240
Synteny	CcUC04G070240
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR000793 - ATP synthase, alpha subunit, C-terminal IPR020003 - ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR038376 - ATP synthase, alpha subunit, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF5950519.1 hypothetical protein HYC85_012512 [Camellia sinensis]

9.6e-43

89.57

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q------QLRLNVRN
        Q      +LR+ ++N
Subjt:  Q------QLRLNVRN

QST20374.1 ATP synthase CF1 alpha subunit [Orostachys japonica]

5.6e-43

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +  + +RN + I K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

YP_009114434.1 ATP synthase CF1 alpha subunit [Paeonia obovata]

2.1e-42

99.01

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

YP_009669805.1 CF1 subunit alpha [Saltera sarcocolla]

1.6e-42

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +    +R  VN  K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

YP_010036617.1 ATP synthase CF1 alpha subunit [Orostachys fimbriata]

5.6e-43

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +  + +RN + I K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8J735 ATP synthase subunit alpha, chloroplastic

1.0e-42

99.01

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

A0A4Y5PSX2 ATP synthase subunit alpha, chloroplastic

7.9e-43

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +    +R  VN  K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

A0A6B9R3Z2 ATP synthase subunit alpha, chloroplastic

2.7e-43

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +  + +RN + I K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

A0A7J7HCR0 ATP synthase subunit alpha, mitochondrial

4.6e-43

89.57

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q------QLRLNVRN
        Q      +LR+ ++N
Subjt:  Q------QLRLNVRN

A0A7U0KLH0 ATP synthase CF1 alpha subunit

2.7e-43

82.03

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q--QLRLNVRNIVNIVKADVVGVASASE
        Q  +  + +RN + I K     + S+++
Subjt:  Q--QLRLNVRNIVNIVKADVVGVASASE

SwissProt top hits

e value

%identity

Alignment

B1A920 ATP synthase subunit alpha, chloroplastic

2.8e-45

99.01

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

Q2MIK2 ATP synthase subunit alpha, chloroplastic

3.7e-45

98.02

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLE+G
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

Q33C53 ATP synthase subunit alpha, chloroplastic

3.7e-45

98.02

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLE+G
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

Q3C1H4 ATP synthase subunit alpha, chloroplastic

3.7e-45

98.02

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLE+G
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

Q8S8Y3 ATP synthase subunit alpha, chloroplastic

3.7e-45

98.02

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLE+G
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

1.3e-26

57.14

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVG+SVSRVGSAAQ+KAMKQV G  KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL E+ KQ Q APL +E+QI+ IY   NG+ D + + 
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  QQLRLNVRNIVNIVKADVV
         ++    + I N VK +++
Subjt:  QQLRLNVRNIVNIVKADVV

ATCG00120.1 ATP synthase subunit alpha

2.9e-45

96.04

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAF+QF+SDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLD LEIG
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  Q
        Q
Subjt:  Q

ATMG01190.1 ATP synthase subunit 1

1.3e-26

57.14

Show/hide

Query:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG
        GI PAINVG+SVSRVGSAAQ+KAMKQV G  KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL E+ KQ Q APL +E+QI+ IY   NG+ D + + 
Subjt:  GIGPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIG

Query:  QQLRLNVRNIVNIVKADVV
         ++    + I N VK +++
Subjt:  QQLRLNVRNIVNIVKADVV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCAGATGAACCCGAAATCCCGGTTCCGCCTGAACCAACCACTTTCGACATTCTCAAGGCTCTGTTGGCCCAAAAGGAAAGCTTGAACCGGGCCGCGGTAAAA
AAAAACATGCTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTCACAGTGGGGACTGCTATGATCATGGTAGCAGCGGTGAAGTAGGCACGGGATTGAACTAC
CTCTTATGGGTGTATATACTCCAGTGTAGCTACAACTTACCATTAGCTGTGGGAATAGGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCA
GCTCAAATTAAAGCCATGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCTCAATTTGCCGAATTAGAAGCCTTTGCGCAATTCGCTTCTGATCTCGATAAA
GCTACTCAGAATCAATTGGCAAGAGGTCAACGATTACGTGAGTTGCTCAAACAATCCCAATCAGCCCCTCTCACGGTAGAAGAACAGATAATGACTATTTATACC
GGAACTAATGGTTATCTTGATTCATTAGAAATTGGACAACAACTTCGTCTAAACGTACGAAATATAGTAAATATCGTAAAGGCAGATGTAGTAGGGGTTGCATCT
GCTTCTGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSDEPEIPVPPEPTTFDILKALLAQKESLNRAAVKKNMLFWREILFHQSSHSGDCYDHGSSGEVGTGLNYLLWVYILQCSYNLPLAVGIGPAINVGISVSRVGSA
AQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQQLRLNVRNIVNIVKADVVGVAS
ASE

CcUC04G070240 (gene) of Watermelon (PI 537277) v1 genome