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CcUC04G070290 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G070290
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionF-box protein At3g07870-like
Genome locationCicolChr04:27089445..27089903
RNA-Seq ExpressionCcUC04G070290
SyntenyCcUC04G070290
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653057.1 hypothetical protein Csa_020016 [Cucumis sativus]3.4e-1839.62Show/hide
Query:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------
        +E +E S + + INCG  LPP I + IFS+L IS+LP+CR+V  TWN L+LDYA S+  +F +  ++       + + L  NPK+HCIN+DT        
Subjt:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------

Query:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL
                  AS +FD D++  I +   CNGL+ I K      C+ GI NPMTNE  ++
Subjt:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL

XP_004141602.1 F-box protein At3g07870 [Cucumis sativus]2.4e-2446.3Show/hide
Query:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYI-----FYFDRN-----HIPFGLSSNPKIHCINID-T
        MEKLE  +  NIN GL LPP++V+VI  +L+IS+LP CR+V +TWN LIL+YA SSKF   +++      ++ RN     H       NPK++CI+I+ T
Subjt:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYI-----FYFDRN-----HIPFGLSSNPKIHCINID-T

Query:  LSSVASFEFDADF--SAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL-PRPELEN
         + +ASF FD +     I I N CNGLL+I K      C  GILNPMTNE F L  +P+++N
Subjt:  LSSVASFEFDADF--SAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL-PRPELEN

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]1.4e-3555.84Show/hide
Query:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF--SRIIYIFYFDR--NHIPFGLS--SNPKIHCINIDTLSS-V
        ME LE+ K I +N  L LPPHIV+ IFS+LSISNLPTCR+VCKTWN L+L+YA S+KF  +  +++   D   N+IPF  +   NPKIHC++ID+ +S V
Subjt:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF--SRIIYIFYFDR--NHIPFGLS--SNPKIHCINIDTLSS-V

Query:  ASFEFDADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE
        ASF F+ D+S I I N CNGLL+I K   +  C  GILNPMTNE  E+P+PE+E
Subjt:  ASFEFDADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE

XP_011648473.2 F-box protein At3g07870 [Cucumis sativus]3.4e-1839.62Show/hide
Query:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------
        +E +E S + + INCG  LPP I + IFS+L IS+LP+CR+V  TWN L+LDYA S+  +F +  ++       + + L  NPK+HCIN+DT        
Subjt:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------

Query:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL
                  AS +FD D++  I +   CNGL+ I K      C+ GI NPMTNE  ++
Subjt:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL

XP_038879760.1 uncharacterized protein LOC120071509 [Benincasa hispida]1.3e-2043.92Show/hide
Query:  INCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSS--NPKIHCINIDTL----------SSVASFEFD
        +N G  L   I + IF RL +SNL TCR+VCKTWN LILDY+ SSK     +I +    +   G SS  NPK+HC  +D L          +  AS  FD
Subjt:  INCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSS--NPKIHCINIDTL----------SSVASFEFD

Query:  ADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE
         D+S I     CNGLL I K     C  +GI NPMTNE F +PR   +
Subjt:  ADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ2 F-box domain-containing protein1.2e-2446.3Show/hide
Query:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYI-----FYFDRN-----HIPFGLSSNPKIHCINID-T
        MEKLE  +  NIN GL LPP++V+VI  +L+IS+LP CR+V +TWN LIL+YA SSKF   +++      ++ RN     H       NPK++CI+I+ T
Subjt:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYI-----FYFDRN-----HIPFGLSSNPKIHCINID-T

Query:  LSSVASFEFDADF--SAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL-PRPELEN
         + +ASF FD +     I I N CNGLL+I K      C  GILNPMTNE F L  +P+++N
Subjt:  LSSVASFEFDADF--SAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL-PRPELEN

A0A0A0LPC6 Uncharacterized protein3.3e-1938.61Show/hide
Query:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLS-SNPKIHCINIDTLSSVASFEF
        ME +E   + ++I+ G  LPP I + IFS+L ISNLP+CR VCKTWN L+L YA S++   +   F    +         NPK+HCIN+D   S    +F
Subjt:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLS-SNPKIHCINIDTLSSVASFEF

Query:  DADFSAIH---------------IFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL
        D ++  I                + + CNGL+FI K      C+ GI NPMTNE F++
Subjt:  DADFSAIH---------------IFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL

A0A0A0LUP7 F-box domain-containing protein1.7e-1839.1Show/hide
Query:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLS-SNPKIHCINIDTLS-------
        ME +E   + ++I+ G  LPP I ++IFS+L ISNLP+CR VCKTWN L+L YA S++   +   F    +         NPK+H IN+D          
Subjt:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLS-SNPKIHCINIDTLS-------

Query:  -----SVASFEFDADFSAIHIFNH-CNGLLFIDKEDKNGCCRLGILNPMTNELFEL
                SF+F  D++ + +  H CNGL+FI K      C+ GI NPMTNE F++
Subjt:  -----SVASFEFDADFSAIHIFNH-CNGLLFIDKEDKNGCCRLGILNPMTNELFEL

A0A0A0LWG1 F-box domain-containing protein1.7e-1839.62Show/hide
Query:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------
        +E +E S + + INCG  LPP I + IFS+L IS+LP+CR+V  TWN L+LDYA S+  +F +  ++       + + L  NPK+HCIN+DT        
Subjt:  MEKLE-SNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSS--KFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDT--------

Query:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL
                  AS +FD D++  I +   CNGL+ I K      C+ GI NPMTNE  ++
Subjt:  ------LSSVASFEFDADFS-AIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFEL

A0A1S3CB99 F-box protein At3g07870-like6.7e-3655.84Show/hide
Query:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF--SRIIYIFYFDR--NHIPFGLS--SNPKIHCINIDTLSS-V
        ME LE+ K I +N  L LPPHIV+ IFS+LSISNLPTCR+VCKTWN L+L+YA S+KF  +  +++   D   N+IPF  +   NPKIHC++ID+ +S V
Subjt:  MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF--SRIIYIFYFDR--NHIPFGLS--SNPKIHCINIDTLSS-V

Query:  ASFEFDADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE
        ASF F+ D+S I I N CNGLL+I K   +  C  GILNPMTNE  E+P+PE+E
Subjt:  ASFEFDADFSAIHIFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELE

SwissProt top hitse value%identityAlignment
Q9FGY4 F-box protein At5g496103.8e-0425.36Show/hide
Query:  GLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCNGL
        G   P  ++  I +RL + +L   + VCK+W RL  D  ++S F+++          +   +S +  + C  +D L  V+    D     + I    NGL
Subjt:  GLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCNGL

Query:  LFIDKEDKNGCCRLGILNPMTNELFELPRPELENIHRF
        L      + G     + NP T E  +LP+     + RF
Subjt:  LFIDKEDKNGCCRLGILNPMTNELFELPRPELENIHRF

Q9SI34 Putative F-box only protein 98.5e-0425.6Show/hide
Query:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF-----SRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCN
        LPP +V+ I SR+  ++L   R  CK WN L  +  ++ K       +   + + D    P  ++ N     I   ++ S+    ++++   I    HC+
Subjt:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF-----SRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCN

Query:  GLLFIDKEDKNGCCRLGILNPMTNE
        GLL    +D     RL + NP   E
Subjt:  GLLFIDKEDKNGCCRLGILNPMTNE

Arabidopsis top hitse value%identityAlignment
AT1G53550.1 F-box family protein1.3e-0427.78Show/hide
Query:  PLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAY-------SSKFSRIIYIFYFDRNHIPFGLSS---NPKIHCINIDTLSSVASFEFDADFSAIH
        P+P  +V  I SRLS+  +  CR V K W+ +I    Y       SS   R++++F   R  + F  S    NP    +   +L   +S  F      +H
Subjt:  PLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAY-------SSKFSRIIYIFYFDRNHIPFGLSS---NPKIHCINIDTLSSVASFEFDADFSAIH

Query:  IFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELENIH
              GL+     ++N    L I NP T E   LP+  +E ++
Subjt:  IFNHCNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELENIH

AT2G04920.1 F-box and associated interaction domains-containing protein6.0e-0525.6Show/hide
Query:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF-----SRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCN
        LPP +V+ I SR+  ++L   R  CK WN L  +  ++ K       +   + + D    P  ++ N     I   ++ S+    ++++   I    HC+
Subjt:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKF-----SRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCN

Query:  GLLFIDKEDKNGCCRLGILNPMTNE
        GLL    +D     RL + NP   E
Subjt:  GLLFIDKEDKNGCCRLGILNPMTNE

AT2G05970.1 F-box family protein with a domain of unknown function (DUF295)5.1e-0424.43Show/hide
Query:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIH-IFNHCNGLLF
        L P +++ +F  LS S+L   R VC +W+        +   ++I ++  F RN++    ++N  +  +  D  S   + +    F   + +  + + +L 
Subjt:  LPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIH-IFNHCNGLLF

Query:  IDKEDKNGCCRLGILNPMTNELFELPRPELE
        +D+      C L ILNP+T E  +LPR + +
Subjt:  IDKEDKNGCCRLGILNPMTNELFELPRPELE

AT5G49610.1 F-box family protein2.7e-0525.36Show/hide
Query:  GLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCNGL
        G   P  ++  I +RL + +L   + VCK+W RL  D  ++S F+++          +   +S +  + C  +D L  V+    D     + I    NGL
Subjt:  GLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNHCNGL

Query:  LFIDKEDKNGCCRLGILNPMTNELFELPRPELENIHRF
        L      + G     + NP T E  +LP+     + RF
Subjt:  LFIDKEDKNGCCRLGILNPMTNELFELPRPELENIHRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGCTGGAAAGCAACAAGATTATCAACATAAATTGTGGGCTTCCACTTCCACCGCATATCGTTCAGGTAATCTTCTCCAGACTTTCTATCTCCAATTTGCCCAC
CTGCAGGATCGTCTGTAAAACTTGGAACCGTCTGATTTTAGATTACGCCTACTCTTCTAAATTCTCTCGCATCATCTATATTTTTTATTTCGACCGCAATCACATTCCTT
TTGGATTATCTAGTAATCCCAAGATCCATTGTATCAATATTGATACGTTGAGTTCTGTTGCCTCATTTGAGTTCGACGCTGATTTTTCGGCTATCCACATTTTCAATCAT
TGTAATGGCCTGCTCTTTATTGACAAAGAAGATAAAAATGGATGCTGTCGACTTGGCATATTAAATCCAATGACTAATGAGTTGTTCGAACTTCCTAGACCAGAATTAGA
AAATATTCATAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGCTGGAAAGCAACAAGATTATCAACATAAATTGTGGGCTTCCACTTCCACCGCATATCGTTCAGGTAATCTTCTCCAGACTTTCTATCTCCAATTTGCCCAC
CTGCAGGATCGTCTGTAAAACTTGGAACCGTCTGATTTTAGATTACGCCTACTCTTCTAAATTCTCTCGCATCATCTATATTTTTTATTTCGACCGCAATCACATTCCTT
TTGGATTATCTAGTAATCCCAAGATCCATTGTATCAATATTGATACGTTGAGTTCTGTTGCCTCATTTGAGTTCGACGCTGATTTTTCGGCTATCCACATTTTCAATCAT
TGTAATGGCCTGCTCTTTATTGACAAAGAAGATAAAAATGGATGCTGTCGACTTGGCATATTAAATCCAATGACTAATGAGTTGTTCGAACTTCCTAGACCAGAATTAGA
AAATATTCATAGGTTCTGA
Protein sequenceShow/hide protein sequence
MEKLESNKIININCGLPLPPHIVQVIFSRLSISNLPTCRIVCKTWNRLILDYAYSSKFSRIIYIFYFDRNHIPFGLSSNPKIHCINIDTLSSVASFEFDADFSAIHIFNH
CNGLLFIDKEDKNGCCRLGILNPMTNELFELPRPELENIHRF