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CcUC04G070560 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G070560
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptiontRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Genome locationCicolChr04:27373261..27373712
RNA-Seq ExpressionCcUC04G070560
SyntenyCcUC04G070560
Gene Ontology termsGO:0048364 - root development (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR033250 - C-terminally encoded peptide


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF39992.1 conserved hypothetical protein [Ricinus communis]1.5e-0844.44Show/hide
Query:  GVCVMIIVLVLCLSHESVY-VECRHLKATRCKKCSKLISAPPRI----HRKSAG---NGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        G C  ++VL+LC  HE++Y VE RHLK   CKKCS+   +   +    H  +     NG Q   ++ +   DFRPT+PGHSPGVGH I N
Subjt:  GVCVMIIVLVLCLSHESVY-VECRHLKATRCKKCSKLISAPPRI----HRKSAG---NGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

EOX91365.1 TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]1.0e-0946.15Show/hide
Query:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        R+  VCV+++VL+LC       VE RHL++  CKKCS+       +         S G+GQ+  T++AE   DFRPTSPGHSPGVGH I N
Subjt:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

KAE8647497.1 hypothetical protein Csa_004238, partial [Cucumis sativus]4.0e-3076.84Show/hide
Query:  MMKRGGRVCGVCVMIIVLVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        MMKR GR CGVC+ IIVLVLCLS+E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T +AELPQDFRPTSPGHSPGVGHHINN
Subjt:  MMKRGGRVCGVCVMIIVLVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

KAG6595044.1 hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia]6.6e-2563Show/hide
Query:  MKRGGRVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIH---RKS-------AGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        MK   R+ GVCV I+ L+LCLSHE VYVECRHLK++RCKKC+K I+ PP ++   +K+       AGN Q+F T++AE PQDFRPTSPGHSPGVGHHINN
Subjt:  MKRGGRVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIH---RKS-------AGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

OMP02045.1 hypothetical protein COLO4_11385 [Corchorus olitorius]2.5e-0843.18Show/hide
Query:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQ---QFMTNEAELPQDFRPTSPGHSPGVGHHINN
        RV   CV ++VL+LC     + VE RHL++  C+KCS+          K  G+     Q  +N+ +   DFRPT+PGHSPGVGH INN
Subjt:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQ---QFMTNEAELPQDFRPTSPGHSPGVGHHINN

TrEMBL top hitse value%identityAlignment
A0A061DGB8 tRNA Delta(2)-isopentenylpyrophosphate transferase, putative4.9e-1046.15Show/hide
Query:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        R+  VCV+++VL+LC       VE RHL++  CKKCS+       +         S G+GQ+  T++AE   DFRPTSPGHSPGVGH I N
Subjt:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSK------LISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

A0A0A0KGB6 Uncharacterized protein1.1e-2070.51Show/hide
Query:  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        +V  + +E VYVECRHLK++R CKKCSK I     PP  H KSAGN QQF T +AELPQDFRPTSPGHSPGVGHHINN
Subjt:  LVLCLSHESVYVECRHLKATR-CKKCSKLISA---PPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

A0A1R3K4N2 Uncharacterized protein1.2e-0843.18Show/hide
Query:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQ---QFMTNEAELPQDFRPTSPGHSPGVGHHINN
        RV   CV ++VL+LC     + VE RHL++  C+KCS+          K  G+     Q  +N+ +   DFRPT+PGHSPGVGH INN
Subjt:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQ---QFMTNEAELPQDFRPTSPGHSPGVGHHINN

A0A2C9URG2 Uncharacterized protein1.6e-0846.59Show/hide
Query:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATR-CKKCSKLISAPPRIHRKSAGN--GQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        RV G C+ ++VL+LC  HE + VE RHLK  + CKKC +L         +      G Q  T++ +   DFRPT PGHSPGVGH INN
Subjt:  RVCGVCVMIIVLVLCLSHESVYVECRHLKATR-CKKCSKLISAPPRIHRKSAGN--GQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

B9S8I9 Uncharacterized protein7.1e-0944.44Show/hide
Query:  GVCVMIIVLVLCLSHESVY-VECRHLKATRCKKCSKLISAPPRI----HRKSAG---NGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN
        G C  ++VL+LC  HE++Y VE RHLK   CKKCS+   +   +    H  +     NG Q   ++ +   DFRPT+PGHSPGVGH I N
Subjt:  GVCVMIIVLVLCLSHESVY-VECRHLKATRCKKCSKLISAPPRI----HRKSAG---NGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN

SwissProt top hitse value%identityAlignment
P0DN96 Precursor of CEP76.6e-0437.33Show/hide
Query:  VMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGH
        ++++++VL L  ES  VE R LK++R    SK  +A          N    +T E      FRPT+PG+SPG+GH
Subjt:  VMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGH

P0DN97 Precursor of CEP81.3e-0430.77Show/hide
Query:  CVMIIVLVLCLSHESVYVECRHLKATR--CKKCSKLISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGH
        C+ ++++ + +SHE +  E RHL+  R   K  +  +       R   G+ +  ++ E     +FRPT+PG+SPG+GH
Subjt:  CVMIIVLVLCLSHESVYVECRHLKATR--CKKCSKLISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGH

Arabidopsis top hitse value%identityAlignment
AT5G66816.1 unknown protein8.9e-0448.72Show/hide
Query:  SAGNGQQFMTNEAE---LPQDFRPTSPGHSPGVGHHINN
        S G G +   NE        DF PT+PGHSPGVGH + N
Subjt:  SAGNGQQFMTNEAE---LPQDFRPTSPGHSPGVGHHINN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAGAGGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGTTTACGTAGAATGCCGGCATCTGAAG
GCCACAAGGTGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGATTCATCGGAAGTCCGCCGGGAATGGTCAACAATTTATGACGAACGAAGCAGAATTA
CCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGA
mRNA sequenceShow/hide mRNA sequence
TATATATATATAGAACCTTAGGCACAAAGCTTATTCAGTACACTCAAATTAGATATCTCCTTCCAACTTTAAGAAAGAAAAATTCTCTCTTTCTTTCTCCTTTAT
TTTCCTCTCTGAATATAAAATATAAATGATGAAGAGAGGTGGTAGGGTTTGTGGGGTTTGTGTTATGATTATTGTTTTGGTTTTATGTTTAAGCCATGAGAGTGT
TTACGTAGAATGCCGGCATCTGAAGGCCACAAGGTGCAAGAAATGCTCCAAATTGATTAGTGCTCCACCGCGGATTCATCGGAAGTCCGCCGGGAATGGTCAACA
ATTTATGACGAACGAAGCAGAATTACCTCAAGATTTTCGTCCCACATCGCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAACTGAAACTCTTTTTACAT
TATCATGCATTTCATTGTATTCTCTCTCTCTC
Protein sequenceShow/hide protein sequence
MMKRGGRVCGVCVMIIVLVLCLSHESVYVECRHLKATRCKKCSKLISAPPRIHRKSAGNGQQFMTNEAELPQDFRPTSPGHSPGVGHHINN