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CcUC04G071230 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G071230
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLate embryogenesis abundant protein
Genome locationCicolChr04:27981135..27981404
RNA-Seq ExpressionCcUC04G071230
SyntenyCcUC04G071230
Gene Ontology termsNA
InterPro domainsIPR018930 - Late embryogenesis abundant protein, LEA-18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12837.1 Late embryogenesis abundant protein, LEA-18 [Cucumis melo var. makuwa]2.1e-3186.67Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        M+KR+ADQ Q Q EE KSEREKERSEG+PLESSPYVNYKDLEDYK+QAYGTQGHLQPKPGR GGGGGPTDAPTLSGDA A SV NRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

XP_016899224.1 PREDICTED: uncharacterized protein LOC107990449 [Cucumis melo]1.4e-3288.89Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        M+KREADQ Q Q EERKSEREKERSEG+PLESSPYVNYKDLEDYK+QAYGTQGHLQPKPGR GGGGGPTDAPTLSGDA A SV NRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

XP_023003117.1 uncharacterized protein LOC111496824 [Cucurbita maxima]1.2e-2882.22Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        MDKREADQP+RQ+ ERKSE ++ER EGIPLE+SPYVNYKDLEDYKNQAYG QGHL+PKP R GGGGG TDAPTLSGDA++ SVINRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

XP_023518886.1 uncharacterized protein LOC111782271 [Cucurbita pepo subsp. pepo]5.1e-3084.27Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP
        MDKREADQP+RQ+ ERKS  E+ER EGIPLE+SPYVNYKDLEDYKNQAYG QGHL+PKP RGGGGG TDAPTLSGDAV+ SVINRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP

XP_038883215.1 uncharacterized protein LOC120074234 [Benincasa hispida]1.3e-3389.89Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP
        MDKRE DQ QRQ+EERKS RE+ERSEGIPLESSPYVNYKDLEDYK+QAYGTQGHLQPKPGRG GGGPTDAPTLSGDA A SVINRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP

TrEMBL top hitse value%identityAlignment
A0A0A0KGG1 Uncharacterized protein1.9e-2790Show/hide
Query:  MDKREADQPQRQ-KEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVA
        M+KREADQ Q Q KE RKSEREKERSE IPLESSPYVNY+DLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDA A
Subjt:  MDKREADQPQRQ-KEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVA

A0A1S4DTA9 uncharacterized protein LOC1079904496.9e-3388.89Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        M+KREADQ Q Q EERKSEREKERSEG+PLESSPYVNYKDLEDYK+QAYGTQGHLQPKPGR GGGGGPTDAPTLSGDA A SV NRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

A0A5D3CLL7 Late embryogenesis abundant protein, LEA-181.0e-3186.67Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        M+KR+ADQ Q Q EE KSEREKERSEG+PLESSPYVNYKDLEDYK+QAYGTQGHLQPKPGR GGGGGPTDAPTLSGDA A SV NRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

A0A6J1HDU8 uncharacterized protein LOC1114630781.8e-2882.02Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP
        MDKREADQP+RQ+ ERKS  E+ER EGIPLE+SPYVNYKDLEDYKNQAYG QGHL+ KP R GGGG TDAPTLSGDAV+ SVINRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP

A0A6J1KLI9 uncharacterized protein LOC1114968246.0e-2982.22Show/hide
Query:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP
        MDKREADQP+RQ+ ERKSE ++ER EGIPLE+SPYVNYKDLEDYKNQAYG QGHL+PKP R GGGGG TDAPTLSGDA++ SVINRQGVP
Subjt:  MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGR-GGGGGPTDAPTLSGDAVALSVINRQGVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G23110.1 Late embryogenesis abundant protein, group 68.1e-1045.05Show/hide
Query:  QKEERKSEREKERSEGIPLES--SPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG-----------DAVALSVINRQGVP
        QK+   +E+E +  +   LES  +PY++Y +LEDYK + YG QGH +PK G GGG   TDAPT SG           D  +   INRQGVP
Subjt:  QKEERKSEREKERSEGIPLES--SPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG-----------DAVALSVINRQGVP

AT2G23110.2 Late embryogenesis abundant protein, group 68.1e-1045.05Show/hide
Query:  QKEERKSEREKERSEGIPLES--SPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG-----------DAVALSVINRQGVP
        QK+   +E+E +  +   LES  +PY++Y +LEDYK + YG QGH +PK G GGG   TDAPT SG           D  +   INRQGVP
Subjt:  QKEERKSEREKERSEGIPLES--SPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSG-----------DAVALSVINRQGVP

AT2G23120.1 Late embryogenesis abundant protein, group 65.8e-0852.31Show/hide
Query:  ERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVA
        E+K+E+ K+    +P + SPY+    LEDYK +AYG +GH +P PG GGG   TDAPT SGDA A
Subjt:  ERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVA

AT2G33690.1 Late embryogenesis abundant protein, group 61.0e-1254.84Show/hide
Query:  EKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSV
        + E  + +PLE+SPY  Y+D+EDYK  AYGT GH   KPG   GGG TDAPT SGDA   ++
Subjt:  EKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAAAAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGGAGAGCAGTCCGTAC
GTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAACCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCC
CCCACTCTCTCCGGTGACGCCGTCGCTTTGTCGGTGATTAACCGCCAAGGAGTACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGCGCGAGGCCGATCAGCCGCAGCGGCAAAAAGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAAGGCATTCCGTTGGAGAGCAGTCCGTAC
GTGAATTATAAAGACTTGGAAGATTACAAAAACCAAGCCTACGGAACTCAAGGCCATCTTCAACCCAAGCCCGGCCGTGGCGGCGGCGGTGGTCCCACCGACGCC
CCCACTCTCTCCGGTGACGCCGTCGCTTTGTCGGTGATTAACCGCCAAGGAGTACCCTGA
Protein sequenceShow/hide protein sequence
MDKREADQPQRQKEERKSEREKERSEGIPLESSPYVNYKDLEDYKNQAYGTQGHLQPKPGRGGGGGPTDAPTLSGDAVALSVINRQGVP