; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G072400 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G072400
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionprotein SKIP34
Genome locationCicolChr04:28968075..28969104
RNA-Seq ExpressionCcUC04G072400
SyntenyCcUC04G072400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]1.6e-3489.36Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+R LFRGS  PYQTSVPENG A VVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_011657944.1 protein SKIP34 [Cucumis sativus]7.0e-3589.36Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+R LFRGSL PYQTSVPENG   VVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_022950522.1 protein SKIP34 [Cucurbita moschata]2.9e-3387.37Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPEN-GDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+RSLFRGS+SP QTSVPEN GDA VVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPEN-GDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_022978829.1 protein SKIP34 [Cucurbita maxima]7.7e-3486.17Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+RSLFRGS+SP QTSVPENGDA VVDNLRGRL ETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]1.3e-3386.17Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+RSLFRG++SP QTSVPENGDA VVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein3.4e-3589.36Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+R LFRGSL PYQTSVPENG   VVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A1S3B1B8 protein SKIP347.5e-3589.36Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+R LFRGS  PYQTSVPENG A VVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A5D3CN14 Protein SKIP347.5e-3589.36Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+R LFRGS  PYQTSVPENG A VVDNLRGRLEETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY+ RQEYVVRLLSP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A6J1GF20 protein SKIP341.4e-3387.37Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPEN-GDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+RSLFRGS+SP QTSVPEN GDA VVDNLRGRL ETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y+ RQEYVVRLL+P S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPEN-GDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

A0A6J1IV54 protein SKIP343.7e-3486.17Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MCNGH+RSLFRGS+SP QTSVPENGDA VVDNLRGRL ETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+Y  RQEYVVRLL+P S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP343.7e-1552.13Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MC GH +SL   S S  +    +  D  VVD+LR RL ETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++  +++ + RL SP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS

Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein2.7e-1652.13Show/hide
Query:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS
        MC GH +SL   S S  +    +  D  VVD+LR RL ETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++  +++ + RL SP S
Subjt:  MCNGHYRSLFRGSLSPYQTSVPENGDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACGACATCGTTTCAACAGCAAGTTTGAGCTTCGATCAATACCCAACCCAAGGGCCGTTTGACCGAGATTCGAGAAGTCAAAAGTCAATCATATCAGAACTCGGA
GCCCAACGATTTTTTAGAAGCCCCAACTTCAAGAACCCGCTTTGTCTATCCAAATACCGATTTACCGCTGCAAGTAAGCTAAACGCTTTTCTCTCTCCGAACTTT
CCGGCGATCGTCGATTTTCAGTCTCCGTCCGCCATGTGTAACGGCCACTACCGATCTTTGTTCAGAGGTAGCCTTTCTCCCTACCAGACCTCCGTACCAGAAAAC
GGCGACGCTTTCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAG
GAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCG
TTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTCACTTTTTTCTATAATATAACTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGT
TTCCAAAATTCTTTAGCTGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGAAGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCA
ATCGCAGGAGAGTTGAGTATGCCGAACGAGAGAGAATCCATGAGAAGAATGTTTTGTTAG
mRNA sequenceShow/hide mRNA sequence
TACGACATCGTTTCAACAGCAAGTTTGAGCTTCGATCAATACCCAACCCAAGGGCCGTTTGACCGAGATTCGAGAAGTCAAAAGTCAATCATATCAGAACTCGGA
GCCCAACGATTTTTTAGAAGCCCCAACTTCAAGAACCCGCTTTGTCTATCCAAATACCGATTTACCGCTGCAAGTAAGCTAAACGCTTTTCTCTCTCCGAACTTT
CCGGCGATCGTCGATTTTCAGTCTCCGTCCGCCATGTGTAACGGCCACTACCGATCTTTGTTCAGAGGTAGCCTTTCTCCCTACCAGACCTCCGTACCAGAAAAC
GGCGACGCTTTCGTTGTGGACAATCTACGGGGTCGATTAGAGGAAACCGAGTCACGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAG
GAAATGAAACGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAATTACCGCCAAGAATATGTGGTTCGTCTCCTCTCCCCTTCCTCG
TTGATTGTATTCGCCATCAAATCTATGGATATATTCGCCCTTGATTTCACTTTTTTCTATAATATAACTAGTCATTTTGTAAGTATTTCTCAGAGTAACACTGGT
TTCCAAAATTCTTTAGCTGAAACTTTGAGAAAGTCGTCCATTTCAAGTACCGAAGCGATTTCGCTTGGGAATGGAATCGTGGAATTGATACCATTAGCTCGTCCA
ATCGCAGGAGAGTTGAGTATGCCGAACGAGAGAGAATCCATGAGAAGAATGTTTTGTTAG
Protein sequenceShow/hide protein sequence
YDIVSTASLSFDQYPTQGPFDRDSRSQKSIISELGAQRFFRSPNFKNPLCLSKYRFTAASKLNAFLSPNFPAIVDFQSPSAMCNGHYRSLFRGSLSPYQTSVPEN
GDAFVVDNLRGRLEETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYNYRQEYVVRLLSPSSLIVFAIKSMDIFALDFTFFYNITSHFVSISQSNTG
FQNSLAETLRKSSISSTEAISLGNGIVELIPLARPIAGELSMPNERESMRRMFC