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CcUC04G073290 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G073290
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Genome locationCicolChr04:29624406..29625288
RNA-Seq ExpressionCcUC04G073290
SyntenyCcUC04G073290
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604007.1 hypothetical protein SDJN03_04616, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6083.87Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK
        MARRKAKK+VKKS+PSP+REAKD +AN            DEDVERHA AIRAIRDVEIERL+ ELRLLRSYF+KEQLQTPLLQFFEEKLPSLSISRR E+
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK

Query:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        GEIEVQWKDTEDELHTNPADGI+IHASLLHRLSTAYPN SAGMRSFNGFEFSSKS
Subjt:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-6084.52Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK
        MARRKAKK+VKKS+PSPVREAKD +AN            DEDVERHA AIRAIRDVEIERL+ ELRLLRSYF+KEQLQTPLLQFFEEKLPSLSISRR E+
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK

Query:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        GEIEVQWKDTEDELHTNPADGI+IHASLLHRLSTAYPN SAGMRSFNGFEFSSKS
Subjt:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
XP_004143493.2 uncharacterized protein LOC101215210 [Cucumis sativus]1.7e-6089.51Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED
        MARRKAKKTVKKS+PSP+ EAKDEAANDEDVERHAAAIRAIRDVEI RL+ ELRLLRSYF+KEQLQTPLLQFFEEKLP LSISR  E+GEIEVQWKDTED
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED

Query:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        EL TNPADGI+IHASLLHRLS AYPN SAGMRSFNGFEFSSKS
Subjt:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
XP_008440665.1 PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo]4.9e-6089.51Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED
        MARRKAKKTVKKS PSPV EAKDE ANDEDVERHAAAIRAIRDVEI RL+ ELRLLRSYF+KEQLQTPLLQFFEEKLP LSISR  E+GEIEVQWKDTED
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED

Query:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        EL TNPADGI+IHASLLHRLS AYPN SAGMRSFNGFEFSSKS
Subjt:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
XP_022950768.1 uncharacterized protein LOC111453776 [Cucurbita moschata]2.9e-6083.87Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK
        MARRKAKK+VKKS+PSP+REAKD +AN            DEDVERHA AIRAIRDVEIERL+ ELRLLRSYF+KEQLQTPLLQFFEEKLPSLSISRR E+
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK

Query:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        GEIEVQWKDTEDELHTNPADGI+IHASLLHRLSTAYPN SAGMRSFNGFEFSSKS
Subjt:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
TrEMBL top hitse value%identityAlignment
A0A0A0KK81 Uncharacterized protein8.1e-6189.51Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED
        MARRKAKKTVKKS+PSP+ EAKDEAANDEDVERHAAAIRAIRDVEIERL+  LRLLRSYF+KEQLQTPLLQFFEEKLP LSISR  E+GEIEVQWKDTED
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED

Query:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        EL TNPADGI+IHASLLHRLS AYPN SAGMRSFNGFEFSSKS
Subjt:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
A0A1S3B1M1 uncharacterized protein LOC1034850082.4e-6089.51Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED
        MARRKAKKTVKKS PSPV EAKDE ANDEDVERHAAAIRAIRDVEI RL+ ELRLLRSYF+KEQLQTPLLQFFEEKLP LSISR  E+GEIEVQWKDTED
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED

Query:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        EL TNPADGI+IHASLLHRLS AYPN SAGMRSFNGFEFSSKS
Subjt:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
A0A5D3CLG2 Uncharacterized protein2.4e-6089.51Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED
        MARRKAKKTVKKS PSPV EAKDE ANDEDVERHAAAIRAIRDVEI RL+ ELRLLRSYF+KEQLQTPLLQFFEEKLP LSISR  E+GEIEVQWKDTED
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTED

Query:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        EL TNPADGI+IHASLLHRLS AYPN SAGMRSFNGFEFSSKS
Subjt:  ELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
A0A6J1GFT3 uncharacterized protein LOC1114537761.4e-6083.87Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK
        MARRKAKK+VKKS+PSP+REAKD +AN            DEDVERHA AIRAIRDVEIERL+ ELRLLRSYF+KEQLQTPLLQFFEEKLPSLSISRR E+
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK

Query:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        GEIEVQWKDTEDELHTNPADGI+IHASLLHRLSTAYPN SAGMRSFNGFEFSSKS
Subjt:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
A0A6J1ILD3 uncharacterized protein LOC1114784962.0e-5983.23Show/hide
Query:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK
        MARRKAKK+VKKS+PSPVREAKD +AN            DEDVERHA AIRAIRDVEIERL+ ELRLLRSYF+KEQLQTPLLQFF EKLPSLSISRR E+
Subjt:  MARRKAKKTVKKSTPSPVREAKDEAAN------------DEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEK

Query:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
        GEIEVQWKDTEDELHTNPADGI+IHASLLHRLSTAYPN SAG+RSFNGFEFSSKS
Subjt:  GEIEVQWKDTEDELHTNPADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39630.1 unknown protein2.7e-2450Show/hide
Query:  MARRKAKKTVK-----KSTPSPVR-EAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQ
        M +RKAK+ VK     ++    +R E K E   DE+VER  AAIRAIRDVEIE+++  LRLLRSYF++EQL TP+L FF+E LP LSISR  E GEIE++
Subjt:  MARRKAKKTVK-----KSTPSPVR-EAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQ

Query:  WKDTEDELHTNPADGINIHASLLHRLSTAY
        W+D   +      +G++++ S+L RLS  +
Subjt:  WKDTEDELHTNPADGINIHASLLHRLSTAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCACCCCTTCACCTGTACGAGAAGCGAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCT
GCTGCAATCCGTGCCATTCGGGATGTGGAGATCGAGCGTTTGGTTAATGAATTGCGGTTGCTTCGTTCGTATTTCAGCAAAGAGCAATTGCAAACTCCTCTATTG
CAATTTTTTGAAGAGAAACTTCCAAGCTTGTCCATATCAAGAAGAGCCGAAAAAGGAGAAATTGAAGTTCAATGGAAGGATACAGAGGATGAATTACACACCAAT
CCAGCTGATGGAATAAATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCCGGAATGCGATCTTTTAATGGATTTGAATTTTCC
AGCAAATCAGGTATCTGTAGATTTTGGATTTTGATGCCTAAAAATAGTTGGTAA
mRNA sequenceShow/hide mRNA sequence
GGTCCACCGGAGCTGAAAAAGAGGAAAAGAGAGATTTCGCGGCAGTTCGCCGGCGTAGTTTAATCCATTTATCTTCGTGTTCCGTGGCTATATCTCTTCAAGTTC
TGGAAATCCACTACGAACTTTTATAAATTTCACTTTGCACTACATTAGGGTTTGAAAGTCTTTGTATTGTTTTTCATTTTATGAAAATCCAATGACGAAGTGCGG
AATGCTGCAACGTGAGTAGTCCAGTAAAGTCAAGAAAGACTGGTTGCTGAGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCACCCCTTCACCTGT
ACGAGAAGCGAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGAGCGTTTGGTTAATGAATT
GCGGTTGCTTCGTTCGTATTTCAGCAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTTGAAGAGAAACTTCCAAGCTTGTCCATATCAAGAAGAGCCGAAAA
AGGAGAAATTGAAGTTCAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAAATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGC
TTATCCTAACTACTCTGCCGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGCAAATCAGGTATCTGTAGATTTTGGATTTTGATGCCTAAAAATAGTTGGTA
A
Protein sequenceShow/hide protein sequence
MARRKAKKTVKKSTPSPVREAKDEAANDEDVERHAAAIRAIRDVEIERLVNELRLLRSYFSKEQLQTPLLQFFEEKLPSLSISRRAEKGEIEVQWKDTEDELHTN
PADGINIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSGICRFWILMPKNSW