; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G073300 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G073300
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranslation initiation factor IF-2, putative isoform 1
Genome locationCicolChr04:29637865..29639896
RNA-Seq ExpressionCcUC04G073300
SyntenyCcUC04G073300
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034696.1 Translation initiation factor IF-2, putative isoform 1 [Cucumis melo var. makuwa]5.8e-2790.28Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG
        FVLEEP DNMVLGMPDILQTPG     +SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG

KAG7034170.1 hypothetical protein SDJN02_03897, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2891.55Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        F LEEP DNMVLGMPD+LQTPGVRI MVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+EDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_016900279.1 PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo]2.9e-2690.14Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP DNMVLGMPDILQTPG     +SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_031741813.1 uncharacterized protein LOC101204054 [Cucumis sativus]1.1e-2891.55Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP D+M LGMPDI+QTPGVRI M+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_038882572.1 uncharacterized protein LOC120073798 [Benincasa hispida]1.1e-2588.73Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP DNMVLGMPDILQTPG     V+NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVY+EDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

TrEMBL top hitse value%identityAlignment
A0A0A0KK81 Uncharacterized protein1.5e-2588.73Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP DN+VLGMPDI QTPG     VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A0A0KRH4 Uncharacterized protein5.1e-2991.55Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP D+M LGMPDI+QTPGVRI M+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A1S4DWB9 uncharacterized protein LOC1034894361.4e-2690.14Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        FVLEEP DNMVLGMPDILQTPG     +SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 12.8e-2790.28Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG
        FVLEEP DNMVLGMPDILQTPG     +SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHG

A0A5D3CLG2 Uncharacterized protein3.4e-2588.73Show/hide
Query:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        F LEEP DNMVLGMPDILQTPG     V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  FVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39630.1 unknown protein2.4e-1558.11Show/hide
Query:  VLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHGES
        V +   +N +L   D  QTPG     V+ QRLS GMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+ E+
Subjt:  VLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHGES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTATTTTGTTTTGGAGGAGCCCCCGGATAATATGGTGCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGTATCTTAATGGTGAGTAACCAAAGATTGTC
CATTGGGATGACACCAAAAACCCGAAGACTGCCAAAGCCAGGCGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCC
ATGGTGAATCACAGGTTGCATCAATTTATTCTATTTACTTCCAGAACTCTCACATCTCAAAGTTTGAGGAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTATTTTGTTTTGGAGGAGCCCCCGGATAATATGGTGCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGTATCTTAATGGTGAGTAACCAAAGATTGTC
CATTGGGATGACACCAAAAACCCGAAGACTGCCAAAGCCAGGCGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCC
ATGGTGAATCACAGGTTGCATCAATTTATTCTATTTACTTCCAGAACTCTCACATCTCAAAGTTTGAGGAATTTTAG
Protein sequenceShow/hide protein sequence
MIYFVLEEPPDNMVLGMPDILQTPGVRILMVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGESQVASIYSIYFQNSHISKFEEF