; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G074110 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G074110
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDEAD/DEAH box helicase
Genome locationCicolChr04:30150540..30152862
RNA-Seq ExpressionCcUC04G074110
SyntenyCcUC04G074110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER27984.1 DEAD/DEAH box helicase [Striga asiatica]3.7e-0627.21Show/hide
Query:  FLTLTILYFHTAIYILYHQNRSICGGQQNPPEITIAVHVGEIQIVNIKLKLAM-AAIKLDFPVPGGPYNR---YPLFQAFPTFLVHGQRIKRRRMVQIYR
        F TL +   +  + IL ++ R I   QQ  P+I I +++ ++QI+NIK ++    + +  FP P  P  +    P    FP  ++               
Subjt:  FLTLTILYFHTAIYILYHQNRSICGGQQNPPEITIAVHVGEIQIVNIKLKLAM-AAIKLDFPVPGGPYNR---YPLFQAFPTFLVHGQRIKRRRMVQIYR

Query:  APIAAAVVIILTFLAKNLHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLKLALLS-----------SPTPIAFIYGTDKSPLEANVFEVIDDFLVLI
         P     V+   F    L             +  R +E+D       G  +L+  LL                +  + G D++P+E +V E++ D   L 
Subjt:  APIAAAVVIILTFLAKNLHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLKLALLS-----------SPTPIAFIYGTDKSPLEANVFEVIDDFLVLI

Query:  NGKRDFLLAGGFADLEIVDRRGD-FSTEIKLGSLENLVDGKPRIFLNDKFGLRRNRAEKVDENG-REEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRG
          + +  +   F D E VD   + F  E+ LG  E LV+G     L+D+ G     AE+V   G  E G E  GEE V    DE   GG+GG+ GEDG G
Subjt:  NGKRDFLLAGGFADLEIVDRRGD-FSTEIKLGSLENLVDGKPRIFLNDKFGLRRNRAEKVDENG-REEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRG

Query:  GLGKG
         +G G
Subjt:  GLGKG

GER42270.1 SAUR-like auxin-responsive protein family [Striga asiatica]6.1e-0928.98Show/hide
Query:  MAAIKLDFPVPGGPYNRYPLFQAFPTFLVHGQRIKRRRMVQIYRAPIAAAVVIILTFLAKN-------------LHNFVLLFNLLSPSQHIRQIEIDNSV
        MAAIKLD PVPGGP +RYPLFQAFPT L      + R M  I     ++++  +  F   +             + +F  +++L+        ++   + 
Subjt:  MAAIKLDFPVPGGPYNRYPLFQAFPTFLVHGQRIKRRRMVQIYRAPIAAAVVIILTFLAKN-------------LHNFVLLFNLLSPSQHIRQIEIDNSV

Query:  PEFFGEQKLKLALLSSP--TPIAFIYGTDKS--------PLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVDRRGDFSTEIKLGSLENLVDGKPRIF
          +    + +  L   P   P A +    ++        P +    E + +  V  +G  D  L  G    E           + LG  E LV G+   +
Subjt:  PEFFGEQKLKLALLSSP--TPIAFIYGTDKS--------PLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVDRRGDFSTEIKLGSLENLVDGKPRIF

Query:  LNDKFGLRRNRAEKVDENGREEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRGG----LGKGHLFEV-------DHVGVRAR
              LRR R E+V E G EE  E  G+E  G+G DE  GG +GG GGE   GG       G L EV       + +GVR R
Subjt:  LNDKFGLRRNRAEKVDENGREEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRGG----LGKGHLFEV-------DHVGVRAR

TQE02531.1 hypothetical protein C1H46_011837 [Malus baccata]1.8e-0533.85Show/hide
Query:  LHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLK-LALLSSP---TPIAFIYGTDKSPLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVD-RRGD
        LHN +L FN + PS+H+RQ  + + V  F  + +LK L L + P    P    +   K PLE N  E + +F V ++GK D LLA  F+DLE +    G 
Subjt:  LHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLK-LALLSSP---TPIAFIYGTDKSPLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVD-RRGD

Query:  FSTEIKLGSLENLVDGKPRIFLNDKFGLRR
           ++ L  + +LV  +    +ND+  ++R
Subjt:  FSTEIKLGSLENLVDGKPRIFLNDKFGLRR

TrEMBL top hitse value%identityAlignment
A0A540MUT1 Uncharacterized protein8.8e-0633.85Show/hide
Query:  LHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLK-LALLSSP---TPIAFIYGTDKSPLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVD-RRGD
        LHN +L FN + PS+H+RQ  + + V  F  + +LK L L + P    P    +   K PLE N  E + +F V ++GK D LLA  F+DLE +    G 
Subjt:  LHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLK-LALLSSP---TPIAFIYGTDKSPLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVD-RRGD

Query:  FSTEIKLGSLENLVDGKPRIFLNDKFGLRR
           ++ L  + +LV  +    +ND+  ++R
Subjt:  FSTEIKLGSLENLVDGKPRIFLNDKFGLRR

A0A5A7P603 DEAD/DEAH box helicase1.8e-0627.21Show/hide
Query:  FLTLTILYFHTAIYILYHQNRSICGGQQNPPEITIAVHVGEIQIVNIKLKLAM-AAIKLDFPVPGGPYNR---YPLFQAFPTFLVHGQRIKRRRMVQIYR
        F TL +   +  + IL ++ R I   QQ  P+I I +++ ++QI+NIK ++    + +  FP P  P  +    P    FP  ++               
Subjt:  FLTLTILYFHTAIYILYHQNRSICGGQQNPPEITIAVHVGEIQIVNIKLKLAM-AAIKLDFPVPGGPYNR---YPLFQAFPTFLVHGQRIKRRRMVQIYR

Query:  APIAAAVVIILTFLAKNLHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLKLALLS-----------SPTPIAFIYGTDKSPLEANVFEVIDDFLVLI
         P     V+   F    L             +  R +E+D       G  +L+  LL                +  + G D++P+E +V E++ D   L 
Subjt:  APIAAAVVIILTFLAKNLHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLKLALLS-----------SPTPIAFIYGTDKSPLEANVFEVIDDFLVLI

Query:  NGKRDFLLAGGFADLEIVDRRGD-FSTEIKLGSLENLVDGKPRIFLNDKFGLRRNRAEKVDENG-REEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRG
          + +  +   F D E VD   + F  E+ LG  E LV+G     L+D+ G     AE+V   G  E G E  GEE V    DE   GG+GG+ GEDG G
Subjt:  NGKRDFLLAGGFADLEIVDRRGD-FSTEIKLGSLENLVDGKPRIFLNDKFGLRRNRAEKVDENG-REEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRG

Query:  GLGKG
         +G G
Subjt:  GLGKG

A0A5A7QAR1 SAUR-like auxin-responsive protein family2.9e-0928.98Show/hide
Query:  MAAIKLDFPVPGGPYNRYPLFQAFPTFLVHGQRIKRRRMVQIYRAPIAAAVVIILTFLAKN-------------LHNFVLLFNLLSPSQHIRQIEIDNSV
        MAAIKLD PVPGGP +RYPLFQAFPT L      + R M  I     ++++  +  F   +             + +F  +++L+        ++   + 
Subjt:  MAAIKLDFPVPGGPYNRYPLFQAFPTFLVHGQRIKRRRMVQIYRAPIAAAVVIILTFLAKN-------------LHNFVLLFNLLSPSQHIRQIEIDNSV

Query:  PEFFGEQKLKLALLSSP--TPIAFIYGTDKS--------PLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVDRRGDFSTEIKLGSLENLVDGKPRIF
          +    + +  L   P   P A +    ++        P +    E + +  V  +G  D  L  G    E           + LG  E LV G+   +
Subjt:  PEFFGEQKLKLALLSSP--TPIAFIYGTDKS--------PLEANVFEVIDDFLVLINGKRDFLLAGGFADLEIVDRRGDFSTEIKLGSLENLVDGKPRIF

Query:  LNDKFGLRRNRAEKVDENGREEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRGG----LGKGHLFEV-------DHVGVRAR
              LRR R E+V E G EE  E  G+E  G+G DE  GG +GG GGE   GG       G L EV       + +GVR R
Subjt:  LNDKFGLRRNRAEKVDENGREEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRGG----LGKGHLFEV-------DHVGVRAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCAATGGCTCCGCGACAATACACTTTTCAAACCCGAGTCAACTCGGCCTCTGCTAAACAAAACCCAATTACAAAAACAGGGTTTCTCTCTGTTTCCTCA
ATGGCTATGCACTCCCACGAGTTCACATCCACGCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCCACGACCACGCCCACGCCCACGCCCACGCCCTCTATATCCAT
ATACAATTCTTCCCATTCTATTTCTCAATTCCCACTTCTTCCTTTTCGGATTTTCTTCATCTCCATCTTCTCCTTCTTCTTCTTCCTCTTCCTCTTCCTCCTCCT
CTTTCTCTTTCTCTTTCTCTTCCTTCTTCTCCTCTTTCTCTTTCTCTTTCCTCTGTTCTTCCCTCTTACGTTTCAGAAAACCCACCAGACCTCCAAGAACGGCCT
CCGTGTCCTCCCCCTTCATTAGCTCTTCCGCTATCTCTGCCGGTGATACTTCCATATCTCCGATCAACGCTTCTATTTCAACGTACATATGATGCTCAGTCGCTT
CCCCGCCTAAGTAATTCGACGCCAACACTTTCAGCCCTTGAGGGCTACAATACGACATGTTTATATGGACATCCATCCGACCCGGCCGCAGCAATGCAGGATCCA
ATCGCTCCTTGTGGGCACTCAACAAAGAAAAACAAAAACAAAAACAGAACCCTCAAGACTAACCTTGCTACTGGATCGATCAAAATGTTCCTCACTCTGACGATT
CTGTATTTCCACACTGCAATCTATATCCTCTATCACCAAAATCGATCGATTTGTGGTGGCCAACAAAACCCTCCTGAGATCACTATTGCTGTACATGTTGGAGAG
ATCCAAATCGTAAATATCAAACTTAAGTTAGCCATGGCGGCAATTAAGCTTGACTTTCCCGTACCAGGAGGACCATACAACAGATATCCCCTCTTCCAAGCCTTC
CCAACCTTTTTGGTCCATGGCCAACGTATCAAACGTCGCCGGATGGTCCAGATTTACAGAGCCCCAATTGCCGCCGCTGTCGTCATCATACTGACATTCCTGGCT
AAAAATCTTCACAACTTTGTTCTCCTCTTTAATCTCCTTAGCCCTTCTCAACACATAAGGCAAATAGAAATCGACAACTCTGTCCCTGAATTTTTTGGGGAACAA
AAGCTCAAATTGGCGCTTCTCTCTTCCCCCACCCCCATTGCGTTCATCTACGGAACAGACAAATCGCCACTGGAGGCGAATGTTTTCGAAGTAATCGATGATTTC
TTGGTCCTTATCAATGGAAAGCGTGACTTTCTTCTGGCGGGGGGTTTTGCTGACCTTGAGATTGTCGATAGAAGGGGTGATTTTAGTACGGAGATAAAACTCGGC
AGCCTGGAAAACCTCGTTGATGGTAAACCCAGAATTTTCCTCAATGACAAATTTGGTCTGAGAAGAAATAGAGCCGAAAAAGTAGACGAAAATGGACGAGAGGAA
GGAGATGAATTTGGGGGGGAGGAGTTCGTTGGTGACGGAACGGATGAGCATCATGGTGGTGGCGAAGGAGGCATAGGCGGAGAAGACGGCAGAGGCGGACTGGGG
AAGGGTCATCTCTTTGAAGTTGATCATGTTGGGGTAAGGGCGAGGAATGGGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCAATGGCTCCGCGACAATACACTTTTCAAACCCGAGTCAACTCGGCCTCTGCTAAACAAAACCCAATTACAAAAACAGGGTTTCTCTCTGTTTCCTCA
ATGGCTATGCACTCCCACGAGTTCACATCCACGCTCGCCCTCGCCCTCGCCCTCGCCCTCGCCCACGACCACGCCCACGCCCACGCCCACGCCCTCTATATCCAT
ATACAATTCTTCCCATTCTATTTCTCAATTCCCACTTCTTCCTTTTCGGATTTTCTTCATCTCCATCTTCTCCTTCTTCTTCTTCCTCTTCCTCTTCCTCCTCCT
CTTTCTCTTTCTCTTTCTCTTCCTTCTTCTCCTCTTTCTCTTTCTCTTTCCTCTGTTCTTCCCTCTTACGTTTCAGAAAACCCACCAGACCTCCAAGAACGGCCT
CCGTGTCCTCCCCCTTCATTAGCTCTTCCGCTATCTCTGCCGGTGATACTTCCATATCTCCGATCAACGCTTCTATTTCAACGTACATATGATGCTCAGTCGCTT
CCCCGCCTAAGTAATTCGACGCCAACACTTTCAGCCCTTGAGGGCTACAATACGACATGTTTATATGGACATCCATCCGACCCGGCCGCAGCAATGCAGGATCCA
ATCGCTCCTTGTGGGCACTCAACAAAGAAAAACAAAAACAAAAACAGAACCCTCAAGACTAACCTTGCTACTGGATCGATCAAAATGTTCCTCACTCTGACGATT
CTGTATTTCCACACTGCAATCTATATCCTCTATCACCAAAATCGATCGATTTGTGGTGGCCAACAAAACCCTCCTGAGATCACTATTGCTGTACATGTTGGAGAG
ATCCAAATCGTAAATATCAAACTTAAGTTAGCCATGGCGGCAATTAAGCTTGACTTTCCCGTACCAGGAGGACCATACAACAGATATCCCCTCTTCCAAGCCTTC
CCAACCTTTTTGGTCCATGGCCAACGTATCAAACGTCGCCGGATGGTCCAGATTTACAGAGCCCCAATTGCCGCCGCTGTCGTCATCATACTGACATTCCTGGCT
AAAAATCTTCACAACTTTGTTCTCCTCTTTAATCTCCTTAGCCCTTCTCAACACATAAGGCAAATAGAAATCGACAACTCTGTCCCTGAATTTTTTGGGGAACAA
AAGCTCAAATTGGCGCTTCTCTCTTCCCCCACCCCCATTGCGTTCATCTACGGAACAGACAAATCGCCACTGGAGGCGAATGTTTTCGAAGTAATCGATGATTTC
TTGGTCCTTATCAATGGAAAGCGTGACTTTCTTCTGGCGGGGGGTTTTGCTGACCTTGAGATTGTCGATAGAAGGGGTGATTTTAGTACGGAGATAAAACTCGGC
AGCCTGGAAAACCTCGTTGATGGTAAACCCAGAATTTTCCTCAATGACAAATTTGGTCTGAGAAGAAATAGAGCCGAAAAAGTAGACGAAAATGGACGAGAGGAA
GGAGATGAATTTGGGGGGGAGGAGTTCGTTGGTGACGGAACGGATGAGCATCATGGTGGTGGCGAAGGAGGCATAGGCGGAGAAGACGGCAGAGGCGGACTGGGG
AAGGGTCATCTCTTTGAAGTTGATCATGTTGGGGTAAGGGCGAGGAATGGGGGATGA
Protein sequenceShow/hide protein sequence
MKPMAPRQYTFQTRVNSASAKQNPITKTGFLSVSSMAMHSHEFTSTLALALALALAHDHAHAHAHALYIHIQFFPFYFSIPTSSFSDFLHLHLLLLLLPLPLPPP
LSLSLSLPSSPLSLSLSSVLPSYVSENPPDLQERPPCPPPSLALPLSLPVILPYLRSTLLFQRTYDAQSLPRLSNSTPTLSALEGYNTTCLYGHPSDPAAAMQDP
IAPCGHSTKKNKNKNRTLKTNLATGSIKMFLTLTILYFHTAIYILYHQNRSICGGQQNPPEITIAVHVGEIQIVNIKLKLAMAAIKLDFPVPGGPYNRYPLFQAF
PTFLVHGQRIKRRRMVQIYRAPIAAAVVIILTFLAKNLHNFVLLFNLLSPSQHIRQIEIDNSVPEFFGEQKLKLALLSSPTPIAFIYGTDKSPLEANVFEVIDDF
LVLINGKRDFLLAGGFADLEIVDRRGDFSTEIKLGSLENLVDGKPRIFLNDKFGLRRNRAEKVDENGREEGDEFGGEEFVGDGTDEHHGGGEGGIGGEDGRGGLG
KGHLFEVDHVGVRARNGG