CuGenDBv2

Gene ID	CcUC04G076260
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	CicolChr04:31514814..31516730
RNA-Seq Expression	CcUC04G076260
Synteny	CcUC04G076260
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

7.1e-77

80.2

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQ-LLCFNCSAILCG
        MES ARILS + FPS+FP P+LNR N  PVWPKK    KS+RLHC       FGEASPE+KAA+NLHNFFTYVAVRIVTAQLEV LQ LLCFNCSA+L  
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQ-LLCFNCSAILCG

Query:  FSLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDT
          L+LILVLVEQSYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D 
Subjt:  FSLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDT

Query:  EK
        EK
Subjt:  EK

XP_004134778.1 chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]

2.1e-73

76.62

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPS+F LP+LNRGNVFPV P KPR FK MRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_008440039.1 PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo]

3.6e-73

77.11

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LP+LNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

6.7e-67

71.14

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MES ARILS + FPS+FPLP+LNR N  PVWPKKP   KS+RLHC       FGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

1.0e-75

78.11

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        ME SARILSS+QFPS+FPLP+LNR NVFPVWPKKP+  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAY ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMZ4 Uncharacterized protein

1.0e-73

76.62

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPS+F LP+LNRGNVFPV P KPR FK MRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTR+MREY+TETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A1S3B054 uncharacterized protein LOC103484635

1.8e-73

77.11

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LP+LNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A5D3CNU4 Chaperonin-like RBCX protein 1

1.8e-73

77.11

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MESSARILS +QFPSIF LP+LNRGNVFPV P KPR  KSMRLHC       FGEASPESKAARNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTE
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

3.2e-67

69.95

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Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC
        MESSAR+LS +QFPS+FPLP+LNR  VFP+WP KP+   F  ++L C       FGEASPE+KAA+NLHNFFTYVAVRIV AQLE               
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILC

Query:  GFSLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD
                     SYNPEA++ELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+
Subjt:  GFSLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSD

Query:  TEK
        TEK
Subjt:  TEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

3.2e-67

71.14

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF
        MES ARILS + FPS+FPLP+LNR N  PVWPKKP   KS+RLHC       FGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGF

Query:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                   SYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV ESNTRLMREYVTETSP D E
Subjt:  SLLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Query:  K
        K
Subjt:  K

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

3.7e-44

52.76

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS
        MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+KAA++LH+FFTYVAVRIV+AQLE                  
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS

Query:  LLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                  SYNPEAY+EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  LLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

2.6e-45

52.76

Show/hide

Query:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS
        MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+KAA++LH+FFTYVAVRIV+AQLE                  
Subjt:  MESSARILSSSQFPSIFPLPSLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFS

Query:  LLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE
                  SYNPEAY+EL EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Subjt:  LLLILVLVEQSYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGAATCATCTGCAAGGATTCTTTCCTCTTCTCAGTTCCCTTCTATTTTCCCACTACCCAGTTTAAACAGAGGCAATGTTTTTCCAGTTTGGCCAAAAAAGCCA
AGAGTTTTCAAGTCTATGCGCTTGCATTGCAGGTTTGGAGAAGCTTCACCAGAATCAAAGGCAGCCAGAAATCTGCATAATTTCTTCACATATGTTGCTGTTAGG
ATAGTGACTGCCCAGCTTGAGGTTACTCTTCAATTGCTTTGTTTTAATTGCTCGGCCATATTGTGTGGGTTTTCATTGTTATTGATTCTTGTTCTGGTAGAGCAG
AGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAATTCTTGGCCAGTTTGATGCGAGAGTCGTCAAGG
CATAAATCTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGTGAA
TCCAACACGAGACTGATGAGGGAATACGTGACAGAGACAAGTCCATCGGATACCGAGAAGTGATGAAATTCTGCATTGTCTTCACTTTTTGCAGTTCAACAGGAG
AGAGGATACATAAATTCCGTGTGTATGATGTGAGATAAGTAACAACGAAGTAGCAAACCCCGTGATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCG
TGCTACAAAATAATATTCATCGCAATTTAAATTACTTAAATGTTTCACCTGTTGCTGAAGATTAACAATGCCCCACCTAAAGTTCAGAAATTTTTTAATCAGCTC
CAGTCTGAAACAGGGTCTTGTGGTTTGCTTAAAAGAAATCAGAGGAAGCAACAAGGTTCAGGCATGTGTAAGAACCAAAATATGGGATGAATGAGAATGCAAGGC
ATTTCAGACCAAGACCTGAATAGGGCAGAGAGACAATCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCAAACTTAACTT
GGGGAAATAATTAGCATGATTAAAAGTGATATTGTTGGGAATCAGTGGCTGGCTAACGTATAGTTTGATCTTCATATATAGATAAGCTCGGAAGAACAAAAGACC
ATATCCTTCCATCTCTCATTCCCCCAATTTCTTTTGTTTAATTAAGGCGAGGTTTTTATAGTTGTAAATCATCCATCACATCAACATATCACCAAATCATCACAT
CAAAACAGACGAATTTTGATATGTAAAAGAGAGATTTGCAAAACTTGACAGTCTGCCAGTAAGCATGGTTCTTTTTGTTATTTTCGAAC

Protein sequence

Show/hide protein sequence

MESSARILSSSQFPSIFPLPSLNRGNVFPVWPKKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLLLILVLVEQ
SYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

CcUC04G076260 (gene) of Watermelon (PI 537277) v1 genome