; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G076870 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G076870
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionribosomal protein L5
Genome locationCicolChr04:31918467..31918925
RNA-Seq ExpressionCcUC04G076870
SyntenyCcUC04G076870
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_020240384.1 uncharacterized protein LOC109819169 [Cajanus cajan]4.7e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

YP_007516856.1 ribosomal protein subunit L5 [Glycine max]4.7e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

YP_009430372.1 orf229 [Bupleurum falcatum]2.8e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

YP_009430373.1 ribosomal protein L5 [Bupleurum falcatum]2.8e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

YP_009913650.1 ribosomal protein L5 [Luffa acutangula]2.9e-6291.85Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MFSLDFHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

TrEMBL top hitse value%identityAlignment
A0A288W768 Ribosomal protein L51.3e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

A0A288W7C7 Orf2291.3e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

A0A386JNB1 Ribosomal protein L52.3e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

A0A7D5Y005 Ribosomal protein L51.4e-6291.85Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MFSLDFHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

K7M8M6 Ribosomal protein subunit L52.3e-6089.63Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L FHYED+SRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLDSPVEIR+NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

SwissProt top hitse value%identityAlignment
P26860 60S ribosomal protein L5, mitochondrial1.6e-3160.94Show/hide
Query:  LDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQ-RGSTGKSFRSNPFL---ESNKDKGYVSDLARQSTLRG
        L+FHY  + R D LLK+N+ N+MEVP  C+I VVPKAP +F IKN KLAMEI+ GQKFIQT+ RGSTGKSFR N F+   ES +D GYV+ LAR STLRG
Subjt:  LDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQ-RGSTGKSFRSNPFL---ESNKDKGYVSDLARQSTLRG

Query:  HGMLNFSVRISTVMSLLDSPVEIRDNSI
        H M NF  ++ T++S  D PV+I+ NSI
Subjt:  HGMLNFSVRISTVMSLLDSPVEIRDNSI

P42793 60S ribosomal protein L5, mitochondrial5.6e-5682.96Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+ RQD LLKLN+ANVMEVPG CEIRVVPKAPY+FIIKNGKLAMEI  GQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NF VRI TVMSLLD PVEIR NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

P49388 60S ribosomal protein L5, mitochondrial1.7e-5278.52Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLL      + +  GSCEIRVVP  PY+FIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLD PVEIR NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

P51409 60S ribosomal protein L5, mitochondrial7.1e-4373.72Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK-APYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKD-KGYVSDLARQSTLR
        MF L FHYED+ RQD LLKLN+ANVMEVPG C+I VVPK AP    IKNGKLAMEI  GQK    QR STGKSFRSNPFL SNKD KGYVSDLARQSTLR
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK-APYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKD-KGYVSDLARQSTLR

Query:  GHGMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GHGM +F VRISTVMSLLDSP+EIR+ SI    +  F
Subjt:  GHGMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

Q05492 60S ribosomal protein L5, mitochondrial1.4e-5481.02Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK--APYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLR
        MF L+FHYED+ RQD LLKLN ANVMEVPG CEIR+VPK  + YDFIIKNGKLAMEILRGQKFIQT+RGSTGKSFRSNPFLESNKDKGYVSDLARQS LR
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPK--APYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLR

Query:  GHGMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GHGM NF VRI TVMSLLDS VEIR+NSI    +  F
Subjt:  GHGMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

Arabidopsis top hitse value%identityAlignment
AT2G07725.1 Ribosomal L5P family protein7.0e-6287.41Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLK NHANVMEVPGSCEIRVVPKAPY+FIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLD PVEIR NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF

ATMG00210.1 ribosomal protein L57.0e-6287.41Show/hide
Query:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH
        MF L+FHYED+SRQDPLLK NHANVMEVPGSCEIRVVPKAPY+FIIKNGKLAMEI RGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGH
Subjt:  MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGH

Query:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF
        GM NFSVRISTVMSLLD PVEIR NSI    +  F
Subjt:  GMLNFSVRISTVMSLLDSPVEIRDNSINSRWKQSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCACTTGATTTTCATTACGAAGATATATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGA
GTCGTTCCAAAGGCACCTTATGATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTTTGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGA
AAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTTGAATTTT
TCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCTGTCGAAATACGGGACAACTCCATTAATTCTCGATGGAAACAGAGTTTTGTGAATTCTCCCCGG
AACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCACTTGATTTTCATTACGAAGATATATCACGTCAGGATCCGTTGCTCAAACTGAATCACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGA
GTCGTTCCAAAGGCACCTTATGATTTCATAATAAAAAATGGAAAATTGGCTATGGAGATTTTGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGA
AAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTTGAATTTT
TCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCTGTCGAAATACGGGACAACTCCATTAATTCTCGATGGAAACAGAGTTTTGTGAATTCTCCCCGG
AACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAG
Protein sequenceShow/hide protein sequence
MFSLDFHYEDISRQDPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEILRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMLNF
SVRISTVMSLLDSPVEIRDNSINSRWKQSFVNSPRNWKIISRSSNIF