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CcUC04G077170 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G077170
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLysM domain-containing protein
Genome locationCicolChr04:32077362..32078568
RNA-Seq ExpressionCcUC04G077170
SyntenyCcUC04G077170
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.6e-2467.05Show/hide
Query:  SIAMFLLAFSLLIFSVSVEGRG----TIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        SIA+FLLA SLLIF++SV+GR      +  EA LELQCN+   VK+GDTCF +   FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  SIAMFLLAFSLLIFSVSVEGRG----TIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]1.1e-2265.91Show/hide
Query:  TSIAMFLLAFSLLIFSVSVEGRGTI---KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        +S  +FLLAFSLLIFS+SVE R T      EA LELQCN+V  VK GDTCFDL   FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Subjt:  TSIAMFLLAFSLLIFSVSVEGRGTI---KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

TMW90128.1 hypothetical protein EJD97_016167 [Solanum chilense]5.3e-1748.98Show/hide
Query:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTI--------KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        +  P   +  F+L  SLL+F   VE + TI         P    E++C++VV VK GDTCFD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Subjt:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTI--------KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]4.3e-2775.9Show/hide
Query:  IAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        IA+FLLAF LLIFS+SV+G   +  E  LELQCN+   VK+GDTCF L HTFKLSTDHFNFINPNLNCSALFVGQWLC+NAFL
Subjt:  IAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]3.4e-2469.05Show/hide
Query:  SIAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        SIA+FLLA SLLIF++SV+G   ++ EA LELQCN+   VK+GDTCF +   FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  SIAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein5.3e-2365.91Show/hide
Query:  TSIAMFLLAFSLLIFSVSVEGRGTI---KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        +S  +FLLAFSLLIFS+SVE R T      EA LELQCN+V  VK GDTCFDL   FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Subjt:  TSIAMFLLAFSLLIFSVSVEGRGTI---KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A0A0KLD2 LysM domain-containing protein1.3e-2467.05Show/hide
Query:  SIAMFLLAFSLLIFSVSVEGRG----TIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        SIA+FLLA SLLIF++SV+GR      +  EA LELQCN+   VK+GDTCF +   FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Subjt:  SIAMFLLAFSLLIFSVSVEGRG----TIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like2.1e-2775.9Show/hide
Query:  IAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        IA+FLLAF LLIFS+SV+G   +  E  LELQCN+   VK+GDTCF L HTFKLSTDHFNFINPNLNCSALFVGQWLC+NAFL
Subjt:  IAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

A0A6N2B813 LysM domain-containing protein2.5e-1748.98Show/hide
Query:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTI--------KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        +  P   +  F+L  SLL+F   VE + TI         P    E++C++VV VK GDTCFD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Subjt:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTI--------KPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

M1C1H7 LysM domain-containing protein4.3e-1750Show/hide
Query:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTIK--PEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL
        +  P   +  F+L  SLL+F   VE + TI      + E++C++VV VK GDTCFD++HTF L +D FN INPNL C+ALFVGQWLC++  L
Subjt:  LPNPITSIAMFLLAFSLLIFSVSVEGRGTIK--PEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGGCCCAGTTGTGCCTGCTTGAAACCTCAACCAATCTAAAAAAGCATCATCGTTTACAAATTTCTTGTACCATCCGCCTACACAAAGGCCGGCTTCCA
AATCCTATTACTTCTATTGCCATGTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCGTGGGACTATTAAGCCAGAAGCAAGGTTGGAG
TTGCAATGCAACAGAGTTGTTGCAGTGAAGACTGGAGACACCTGCTTTGATCTTACTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAAT
CTCAATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGC
mRNA sequenceShow/hide mRNA sequence
AATTTATATGGCTCTGGCCCAGTTGTGCCTGCTTGAAACCTCAACCAATCTAAAAAAGCATCATCGTTTACAAATTTCTTGTACCATCCGCCTACACAAAGGCCG
GCTTCCAAATCCTATTACTTCTATTGCCATGTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCGTGGGACTATTAAGCCAGAAGCAAG
GTTGGAGTTGCAATGCAACAGAGTTGTTGCAGTGAAGACTGGAGACACCTGCTTTGATCTTACTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAA
TCCAAATCTCAATTGCTCTGCTCTCTTTGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGC
Protein sequenceShow/hide protein sequence
MALAQLCLLETSTNLKKHHRLQISCTIRLHKGRLPNPITSIAMFLLAFSLLIFSVSVEGRGTIKPEARLELQCNRVVAVKTGDTCFDLTHTFKLSTDHFNFINPN
LNCSALFVGQWLCLNAFLG