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CcUC04G077650 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G077650
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSphingolipid delta(4)-desaturase DES1-like
Genome locationCicolChr04:32389197..32390281
RNA-Seq ExpressionCcUC04G077650
SyntenyCcUC04G077650
Gene Ontology termsGO:0030148 - sphingolipid biosynthetic process (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042284 - sphingolipid delta-4 desaturase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR013866 - Sphingolipid delta4-desaturase, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV77917.1 FA_desaturase domain-containing protein/Lipid_DES domain-containing protein [Cephalotus follicularis]7.1e-3586.21Show/hide
Query:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        GDE+EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+PLAF K+TAVV+LQL TAT LH A WLKIL I+YFFGSFLNHNLF
Subjt:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

XP_004293585.1 PREDICTED: sphingolipid delta(4)-desaturase DES1-like [Fragaria vesca subsp. vesca]7.1e-3582.42Show/hide
Query:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G R G+E+EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+PLAF+K+T VV+LQL TA  LH A WLKIL IAYFFGSFLNHNLF
Subjt:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

XP_021596857.1 sphingolipid delta(4)-desaturase DES1-like [Manihot esculenta]1.9e-3583.52Show/hide
Query:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G    +E+EG MATDFFWSYTDEPHASRRR ILSQYPQIKELFGP+PLAF+KVT VV+LQLWTAT LH A WLKILGIAYFFGSFLNHNLF
Subjt:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

XP_021640020.1 sphingolipid delta(4)-desaturase DES1-like [Hevea brasiliensis]9.2e-3587.06Show/hide
Query:  EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        ++EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+PLAF+KVT VV+LQLWTAT LH A WLKIL IAYFFGSFLNHNLF
Subjt:  EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

XP_042520188.1 sphingolipid delta(4)-desaturase DES1-like [Macadamia integrifolia]3.2e-3587.36Show/hide
Query:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G+E EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+P AFIK+TAVV LQLWTAT+LH A WLKIL IAYFFGSFLNHNLF
Subjt:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

TrEMBL top hitse value%identityAlignment
A0A1Q3CCG9 Sphingolipid delta(4)-desaturase DES1-like3.4e-3586.21Show/hide
Query:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        GDE+EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+PLAF K+TAVV+LQL TAT LH A WLKIL I+YFFGSFLNHNLF
Subjt:  GDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

A0A2C9U8D3 Sphingolipid delta(4)-desaturase DES1-like9.0e-3683.52Show/hide
Query:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G    +E+EG MATDFFWSYTDEPHASRRR ILSQYPQIKELFGP+PLAF+KVT VV+LQLWTAT LH A WLKILGIAYFFGSFLNHNLF
Subjt:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

A0A314UP27 Sphingolipid delta(4)-desaturase DES1-like7.6e-3580.22Show/hide
Query:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G +   E+EG MATDFFWSYTDEPHASRRRQILSQYPQ+KELFGP+P AF+K+T VV+LQLWTAT LH A WLKIL IAYFFGSFLNHNLF
Subjt:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

A0A6J5UK09 Sphingolipid delta(4)-desaturase DES1-like7.6e-3581.32Show/hide
Query:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        G +   E+EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+P AF+K+T VV+LQLWTAT LH A WLKIL IAYFFGSFLNHNLF
Subjt:  GSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

M5WTY1 Sphingolipid delta(4)-desaturase DES1-like7.6e-3585.88Show/hide
Query:  EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        E+EG MATDFFWSYTDEPHASRRRQILSQYPQIKELFGP+P AF+K+T VV+LQLWTAT LH A WLKIL IAYFFGSFLNHNLF
Subjt:  EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

SwissProt top hitse value%identityAlignment
G5EC63 Putative sphingolipid delta(4)-desaturase/C4-monooxygenase6.7e-1240.54Show/hide
Query:  DFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNH
        DF W+ T++PH SRR +I+ +YP++K+LFG +P     V+++V+ Q++    L  A W+ I+  AYF G  +NH
Subjt:  DFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNH

O44186 Putative sphingolipid delta(4)-desaturase1.2e-1350Show/hide
Query:  DFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNL
        DF W+YT+EPHASRR++IL++YPQIKELFG +      V  +V+ Q+  A  L  + WL IL  AYF    +NH+L
Subjt:  DFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNL

Q0II71 Sphingolipid delta(4)-desaturase/C4-monooxygenase DES21.1e-1140.66Show/hide
Query:  MGSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNL
        MG+R G        +DF W YTD+PH  RR+++L++YP IK L  P+P     VTA+V+ QL       G +W  +   AY FG  +NH+L
Subjt:  MGSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNL

Q6H5U3 Sphingolipid delta(4)-desaturase DES1-like3.3e-3575.53Show/hide
Query:  MGSRTGD--EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        MG+  GD  E+EG MATDFFWSYTDEPHA+RRR+IL+++PQIKELFGP+PLAF+K+ AVV LQLWTAT L  ASW+KIL +AYFFGSFLNHNLF
Subjt:  MGSRTGD--EKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

Q9ZPH4 Sphingolipid delta(4)-desaturase DES1-like1.4e-3375.56Show/hide
Query:  SRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        S   +E+EG MATDFFWSYTDEPHASRRRQILS YPQI++LFGP+P AF+K+T VV+LQL TA  LH + WLKIL IAYFFGSFLNHNLF
Subjt:  SRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF

Arabidopsis top hitse value%identityAlignment
AT4G04930.1 fatty acid desaturase family protein9.8e-3575.56Show/hide
Query:  SRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF
        S   +E+EG MATDFFWSYTDEPHASRRRQILS YPQI++LFGP+P AF+K+T VV+LQL TA  LH + WLKIL IAYFFGSFLNHNLF
Subjt:  SRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGCAGAACAGGAGATGAAAAGGAAGGATCAATGGCCACGGATTTCTTCTGGTCATACACGGACGAGCCTCACGCTTCAAGAAGGCGTCAGATTCTTTCA
CAGTACCCTCAAATCAAGGAACTCTTCGGTCCTGAACCCCTGGCTTTTATTAAGGTTACTGCAGTGGTGGTACTTCAGCTATGGACGGCCACGACTCTACACGGC
GCAAGCTGGCTGAAAATTCTTGGAATTGCATACTTCTTTGGCTCCTTTTTGAACCATAACCTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGCAGAACAGGAGATGAAAAGGAAGGATCAATGGCCACGGATTTCTTCTGGTCATACACGGACGAGCCTCACGCTTCAAGAAGGCGTCAGATTCTTTCA
CAGTACCCTCAAATCAAGGAACTCTTCGGTCCTGAACCCCTGGCTTTTATTAAGGTTACTGCAGTGGTGGTACTTCAGCTATGGACGGCCACGACTCTACACGGC
GCAAGCTGGCTGAAAATTCTTGGAATTGCATACTTCTTTGGCTCCTTTTTGAACCATAACCTCTTTTAG
Protein sequenceShow/hide protein sequence
MGSRTGDEKEGSMATDFFWSYTDEPHASRRRQILSQYPQIKELFGPEPLAFIKVTAVVVLQLWTATTLHGASWLKILGIAYFFGSFLNHNLF