; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G079070 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G079070
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA-binding protein
Genome locationCicolChr04:33411838..33418554
RNA-Seq ExpressionCcUC04G079070
SyntenyCcUC04G079070
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439666.1 PREDICTED: DNA-binding protein DDB_G0278111 [Cucumis melo]5.0e-5398.43Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_022926831.1 DNA-binding protein DDB_G0278111-like [Cucurbita moschata]6.5e-5397.64Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_023518943.1 DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo]8.5e-5396.85Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRS+LEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_031744105.1 DNA-binding protein DDB_G0278111 isoform X1 [Cucumis sativus]5.0e-5398.43Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]2.9e-5398.43Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEARSEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

TrEMBL top hitse value%identityAlignment
A0A0A0KKK2 Uncharacterized protein2.4e-5398.43Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A1S3AZB0 DNA-binding protein DDB_G02781112.4e-5398.43Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        +DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1EFZ2 DNA-binding protein DDB_G0278111-like3.2e-5397.64Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1IUM6 DNA-binding protein DDB_G0278111-like isoform X12.0e-5296.06Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

A0A6J1KTQ8 DNA-binding protein DDB_G0278111-like3.2e-5397.64Show/hide
Query:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITL
Subjt:  DDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLEDDD
        LEQINNQTTKQTKVTIQRRRSVLEDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLEDDD

SwissProt top hitse value%identityAlignment
O14737 Programmed cell death protein 55.1e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G    +      AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        ++++ QT K T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

P56812 Programmed cell death protein 55.1e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G    +      AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        E+++ QT K+T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

Q2HJH9 Programmed cell death protein 51.9e-1542.06Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        + ELEA+R++R+ EL A+ G    +      AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        E+++ QT K+T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

Q54YS0 DNA-binding protein DDB_G02781112.4e-1850.85Show/hide
Query:  QRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT
        ++ +Q+ ++Q   G   +PE Q+ QE  R EA ERRQ +L QIL+  ARERLSRI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ T
Subjt:  QRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT

Query:  KQTKVTIQRRRSVLEDDD
        K+T +T++RR   +EDDD
Subjt:  KQTKVTIQRRRSVLEDDD

Q5RBT0 Programmed cell death protein 55.1e-1642.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D ELEA+R++R+ EL A+ G    +      AQ+EA+    E R  +L+Q+L   AR RLS +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L
Subjt:  DPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLEDDD
        ++++ QT K T V   RR+ +  D+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLEDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein8.2e-4682.95Show/hide
Query:  DPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
        DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
Subjt:  DPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI

Query:  TLLEQINNQTTKQTKVTIQRRRSVLEDDD
        TLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  TLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.2 double-stranded DNA-binding family protein1.1e-4582.31Show/hide
Query:  DPELEAIRQRRMQELMAQRGM----GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL
        DPELEAIRQRRMQELMA++GM    G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL
Subjt:  DPELEAIRQRRMQELMAQRGM----GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERL

Query:  ITLLEQINNQTTKQTKVTIQRRRSVLEDDD
        ITLLEQIN+QTTKQTKVT QRRR V  DDD
Subjt:  ITLLEQINNQTTKQTKVTIQRRRSVLEDDD

AT1G29850.3 double-stranded DNA-binding family protein2.2e-4380.65Show/hide
Query:  DPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
        DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+A+ EA+ERRQMMLSQ+LS QARER++RIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI
Subjt:  DPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI

Query:  TLLEQINNQTTKQTKVTIQRRRSV
        TLLEQIN+QTTKQTKVT+    +V
Subjt:  TLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGTGCACTTTGATGCAAGGAGATGATCCTGAACTAGAAGCAATCAGACAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCC
TGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTG
CATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTA
GAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTTGAGGATGACGATTAG
mRNA sequenceShow/hide mRNA sequence
GTGGAGGAGAGAAAAATGAAAAAGCTATAAATATGATCATGGGCATCGCAGTACAACATGAATGAGTGCACTTTGATGCAAGGAGATGATCCTGAACTAGAAGCAATCAG
ACAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGAC
AAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCT
GCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCG
TCGAAGCGTTCTTGAGGATGACGATTAGCAAGTGAGATGAATTGCACACCTTTATGATGTATGCATATACCAGCAGTGTCAGTTGTATGGTTATTGCTTGTGCGATACAA
TATCTACCTTTTTATCTATTTATTCTGCTGCGTTACTTTATCACGAGCCCCCTATATTCTCACCTCAGACTGCCACAGCTCCTCGTAGTTAGCTGTATTACACCATTGTT
GCGGTCAAATTCGCCAAACTATTAAGCTTATGACAGAGTGTCAACCTTGAATTATTATTTTGCTTTCTATTGTTAAAGAGGAATTTGAATTTCCTTCAAGTCTGAGAGTA
TTTTTAATCAAGAGATTGATCTGTCACTGTCTGGTGCAATCCACGCAAATTTGGAACCATTGTTTACAGCTCTTGATGAAGGGTTGCATTGGGTTGCTGTTTACAAGTTA
AAAGATGGAAGTGCATTTAGTACCATCTTCTGTTTCAATATAATTGTGGAAGTTAACAAACCTGGAAAAGTAGTCTACTTTCCTGGGAGGAAACATAGATGTAACAGATG
TTTAGTACTAAAGCTAGGCCCATCGCTTAAATAGACCATTTTCTC
Protein sequenceShow/hide protein sequence
MNECTLMQGDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
EQINNQTTKQTKVTIQRRRSVLEDDD