; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G079780 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G079780
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionF-box protein SKIP19-like
Genome locationCicolChr04:34012789..34013226
RNA-Seq ExpressionCcUC04G079780
SyntenyCcUC04G079780
Gene Ontology termsNA
InterPro domainsIPR006553 - Leucine-rich repeat, cysteine-containing subtype
IPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581459.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3767.63Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L K  LV C  IS++GLIKA+SKL LLE LEI    S  V TL T+GQC PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL+
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

KAG7034751.1 Protein BREAST CANCER SUSCEPTIBILITY 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3767.14Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L K  LV C  IS++GLIKA+SKL LLE LEI    S  V TL T+GQC PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        +AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

XP_008439579.1 PREDICTED: putative F-box/LRR-repeat protein 9 [Cucumis melo]1.4e-3760.58Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L +  + +C+ IS+ GLIKA+SKL LLE LEIF+CC    +TL T+G CCPLLK LKLN+Q    + +  D+ A+A+A+TMPKLRHLQI GN L+D+GLQ
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        AILDGC DLESLDLRQCFNL   GQL + C ++IK L
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

XP_023543623.1 F-box protein SKIP19-like [Cucurbita pepo subsp. pepo]1.1e-3767.14Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L K  LV C  IS++GLIKA+SKL LLE LEI    S  V TL T+GQC PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        +AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

XP_038883506.1 F-box protein SKIP19-like [Benincasa hispida]5.7e-3963.57Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L +  L +CY+IS++GL +AIS+L LLE+LEIFI  S  V TL+T+G+CCPLLK LKL ++ +    + ++K A+A+AETMPKLRHLQI GNGLT+ GL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        QAILDGCPDLESLDLRQCF+LNL GQL ++CA+R KVL L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

TrEMBL top hitse value%identityAlignment
A0A0A0KM43 F-box domain-containing protein1.5e-3761.15Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L +  + +C+ IS+ GLIKA SKL LLE LEIF+CC    RTL T+G+CCPLLK LKLN+Q    + +  D+ A+A+A+TMPKLRHLQI GN LTD+GLQ
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        AIL+GCPDLESLDLR CFNL   G+L   CA+ IK+L L
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

A0A1S3AZR6 putative F-box/LRR-repeat protein 96.8e-3860.58Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L +  + +C+ IS+ GLIKA+SKL LLE LEIF+CC    +TL T+G CCPLLK LKLN+Q    + +  D+ A+A+A+TMPKLRHLQI GN L+D+GLQ
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        AILDGC DLESLDLRQCFNL   GQL + C ++IK L
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

A0A6J1ECV6 F-box protein SKIP19-like isoform X11.5e-3766.43Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L +  LV C  IS++GLIKA+SKL LLE LEI    S  V TL T+GQC PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        +AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

A0A6J1EGI8 F-box protein SKIP19-like isoform X21.5e-3766.43Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L +  LV C  IS++GLIKA+SKL LLE LEI    S  V TL T+GQC PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        +AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

A0A6J1ILH5 F-box protein SKIP19-like5.8e-3765.71Show/hide
Query:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        +L K  LV C  IS++G IKA+SKL LLE LEI    S  V TL T+G C PLLK LKLN+Q +  RRV  DK A+A+AE MP LRHLQI GN LT+RGL
Subjt:  RLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL
        +AILDGCPDLESLDLRQCFNLNLAGQL  KC+++IK L L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLL

SwissProt top hitse value%identityAlignment
Q9M0U6 Putative F-box/LRR-repeat protein 222.0e-2654.84Show/hide
Query:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPDLES
        I++ G+ +AI KL LLE LE+ + CS++    +TIGQ CP LK LKL    W      SD  A+A+A+TMP L HLQ+  NGLT+ GL AILDGCP LE 
Subjt:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPDLES

Query:  LDLRQCFNLNLAGQLRQKCAQRIK
        LDLRQCFN+NL G L ++C +RIK
Subjt:  LDLRQCFNLNLAGQLRQKCAQRIK

Q9M0U7 Putative F-box protein At4g054757.5e-2651.09Show/hide
Query:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLN----------KQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQA
        ++NKG++  I KL LLE L IF   S+K+  L+ IG  CP LK LKLN           Q+  +  +  D  A+A+AE+MPKLRHLQ+ GNGLT+ GL A
Subjt:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLN----------KQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQA

Query:  ILDGCPDLES-LDLRQCFNLNLAGQLRQKCAQRIKVL
        ILDGCP LE  LD+R+CFN+NL G L ++C +RIK L
Subjt:  ILDGCPDLES-LDLRQCFNLNLAGQLRQKCAQRIKVL

Q9M0U8 Putative F-box/LRR-repeat protein 213.0e-2242.76Show/hide
Query:  LDKFSLVECY-NISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNK--QLW------------KVRRVASDKRAVAMAETMPKLR
        L    L  C+  ++  G++ AI+K+ LLE LE+   C +K+  L+ IG  CP LK LKLN   +LW             +  +  D  A+A+AE+MPKL 
Subjt:  LDKFSLVECY-NISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNK--QLW------------KVRRVASDKRAVAMAETMPKLR

Query:  HLQICGNGLTDRGLQAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        HLQ+  N LT+ GL AILDGCP LE LD+R+CF ++L G L ++C + IK L
Subjt:  HLQICGNGLTDRGLQAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

Q9M0U9 F-box protein SKIP191.0e-3051.82Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L    L+ C  I++ G ++A+ KL  LE LE+   CS  V +LR +GQCC  +K LKLNK   K     +D  A+A+AETMPKLRHLQ+CGNGL+D GL 
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        AILD C +LE LDLR+CFN+NL G L+++C + +KV+
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

Q9S9V9 Putative F-box/LRR-repeat protein 235.4e-3253.62Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNK-QLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL
        L    LV C+ I+++G+ KA+SK+ LLEYLE+  C      +LR IG+ CP LK LKLN+           D  A A+AE+MP+LRHLQ+ GNGLT++GL
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNK-QLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGL

Query:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
         AILDGCP LE LDLRQCFN+NL G L+++C +RIK L
Subjt:  QAILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

Arabidopsis top hitse value%identityAlignment
AT4G03630.1 RNI-like superfamily protein1.7e-2548.18Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L    L +C  I+  GL     KL LLE LE+  C  +K + L  IG  C  LK LKLN Q +K      D  A+ +A+ MP+LR LQ+ GN ++D GL 
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        AI DGCP LE LDLRQCFN+NL G L ++C +RIK L
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

AT4G05460.1 RNI-like superfamily protein7.2e-3251.82Show/hide
Query:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ
        L    L+ C  I++ G ++A+ KL  LE LE+   CS  V +LR +GQCC  +K LKLNK   K     +D  A+A+AETMPKLRHLQ+CGNGL+D GL 
Subjt:  LDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQ

Query:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL
        AILD C +LE LDLR+CFN+NL G L+++C + +KV+
Subjt:  AILDGCPDLESLDLRQCFNLNLAGQLRQKCAQRIKVL

AT4G05475.1 RNI-like superfamily protein5.3e-2751.09Show/hide
Query:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLN----------KQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQA
        ++NKG++  I KL LLE L IF   S+K+  L+ IG  CP LK LKLN           Q+  +  +  D  A+A+AE+MPKLRHLQ+ GNGLT+ GL A
Subjt:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLN----------KQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQA

Query:  ILDGCPDLES-LDLRQCFNLNLAGQLRQKCAQRIKVL
        ILDGCP LE  LD+R+CFN+NL G L ++C +RIK L
Subjt:  ILDGCPDLES-LDLRQCFNLNLAGQLRQKCAQRIKVL

AT4G05490.1 RNI-like superfamily protein1.4e-2754.84Show/hide
Query:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPDLES
        I++ G+ +AI KL LLE LE+ + CS++    +TIGQ CP LK LKL    W      SD  A+A+A+TMP L HLQ+  NGLT+ GL AILDGCP LE 
Subjt:  ISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPDLES

Query:  LDLRQCFNLNLAGQLRQKCAQRIK
        LDLRQCFN+NL G L ++C +RIK
Subjt:  LDLRQCFNLNLAGQLRQKCAQRIK

AT5G52480.1 RNI-like superfamily protein2.9e-2549.61Show/hide
Query:  CYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPD
        C  I++ G ++A+ KL +LE LE+    SL   +++  G  CP LK L LN+ L+ +     D  A+A+AE+MPKLRHLQ+CGN LT  GL AILDGCP 
Subjt:  CYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGCPD

Query:  LESLDLRQCFNLNLAGQLRQKCAQRIKVL
        LE LDLRQC  +NL G L ++C ++IK L
Subjt:  LESLDLRQCFNLNLAGQLRQKCAQRIKVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTTCGTTTGGACAAGTTCTCTCTTGTGGAATGCTATAACATCTCAAATAAGGGATTGATTAAAGCAATTTCAAAACTTTCATTGTTGGAATATCTTGAAATATT
TATCTGTTGTTCATTGAAAGTAAGGACTTTGAGAACTATTGGACAGTGCTGCCCTCTTTTGAAGTTATTGAAACTAAACAAACAGCTTTGGAAAGTACGACGAGTGGCAA
GCGACAAGCGAGCCGTTGCTATGGCTGAAACTATGCCGAAGTTACGTCACCTCCAGATATGTGGCAATGGCCTAACTGACAGGGGCTTACAGGCTATTCTTGATGGTTGT
CCTGATTTAGAATCTCTCGACTTACGCCAGTGTTTCAATTTAAATTTGGCGGGACAGTTGAGACAAAAATGTGCTCAAAGGATCAAAGTTTTACTACTGAATTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTTCGTTTGGACAAGTTCTCTCTTGTGGAATGCTATAACATCTCAAATAAGGGATTGATTAAAGCAATTTCAAAACTTTCATTGTTGGAATATCTTGAAATATT
TATCTGTTGTTCATTGAAAGTAAGGACTTTGAGAACTATTGGACAGTGCTGCCCTCTTTTGAAGTTATTGAAACTAAACAAACAGCTTTGGAAAGTACGACGAGTGGCAA
GCGACAAGCGAGCCGTTGCTATGGCTGAAACTATGCCGAAGTTACGTCACCTCCAGATATGTGGCAATGGCCTAACTGACAGGGGCTTACAGGCTATTCTTGATGGTTGT
CCTGATTTAGAATCTCTCGACTTACGCCAGTGTTTCAATTTAAATTTGGCGGGACAGTTGAGACAAAAATGTGCTCAAAGGATCAAAGTTTTACTACTGAATTTATGA
Protein sequenceShow/hide protein sequence
MNFRLDKFSLVECYNISNKGLIKAISKLSLLEYLEIFICCSLKVRTLRTIGQCCPLLKLLKLNKQLWKVRRVASDKRAVAMAETMPKLRHLQICGNGLTDRGLQAILDGC
PDLESLDLRQCFNLNLAGQLRQKCAQRIKVLLLNL