; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G079940 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G079940
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S25
Genome locationCicolChr04:34198636..34198980
RNA-Seq ExpressionCcUC04G079940
SyntenyCcUC04G079940
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI32218.3 unnamed protein product, partial [Vitis vinifera]2.8e-2580Show/hide
Query:  HIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        H+P + +  R +F  MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLL+EVPKYKL+TPSI
Subjt:  HIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

KAG6573888.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia]5.5e-2985.88Show/hide
Query:  LSSLLHIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        + S+  I Q   LRR NFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  LSSLLHIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

XP_016900931.1 PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]3.1e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

XP_022945101.1 40S ribosomal protein S25-2-like [Cucurbita moschata]3.1e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

XP_022961406.1 40S ribosomal protein S25-2-like [Cucurbita moschata]3.1e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

TrEMBL top hitse value%identityAlignment
A0A5D3CG38 40S ribosomal protein S251.5e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

A0A6J1HAA0 40S ribosomal protein S251.5e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

A0A6J1HUK6 40S ribosomal protein S251.5e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

A0A6J1HZE7 40S ribosomal protein S251.5e-2496.92Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLLVEVPKYKLVTPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

F6HPY1 40S ribosomal protein S251.0e-2569.31Show/hide
Query:  KKLNSAYLIRICSLS---SLLHIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPS
        K L     I+IC  +   S  H+P + +  R +F  MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLL+EVPKYKL+TPS
Subjt:  KKLNSAYLIRICSLS---SLLHIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPS

Query:  I
        I
Subjt:  I

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S253.6e-2384.62Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F + TYDKLL E PKYKL+TPS+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

Q8GYL5 40S ribosomal protein S25-33.2e-2487.69Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F Q TYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

Q9SIK2 40S ribosomal protein S25-23.8e-2589.23Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

Q9SIW5 40S ribosomal protein S25-15.5e-2486.15Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F Q TYDKL+ E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

Q9T029 40S ribosomal protein S25-41.9e-2487.69Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F Q TYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein2.7e-2689.23Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F QGTYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

AT2G21580.2 Ribosomal protein S25 family protein1.5e-2487.69Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMV F QGTYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

AT4G34555.1 Ribosomal protein S25 family protein2.3e-2587.69Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F Q TYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

AT4G39200.1 Ribosomal protein S25 family protein1.4e-2587.69Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMV F Q TYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI

AT4G39200.2 Ribosomal protein S25 family protein7.4e-2486.15Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMV F Q TYDKLL E PK+KL+TPSI
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYKLVTPSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTACAAACCCCCAAAAGGAAGAGAAAAGCCTACAAGAAGCTTAACAGTGCATACTTGATCCGCATTTGCTCCCTCTCTTCTCTTCTGCATATTCCTCAG
TACATCCAACTCCGGCGGTGCAACTTTGATACAATGGCGCCAAAGAAGGATAAGGCGCCTCCCCCATCTTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAG
AAGAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTTTTTTATCAAGGAACTTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAG
CTGGTCACTCCATCAATCCCGATAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACTACAAACCCCCAAAAGGAAGAGAAAAGCCTACAAGAAGCTTAACAGTGCATACTTGATCCGCATTTGCTCCCTCTCTTCTCTTCTGCATATTCCTCAG
TACATCCAACTCCGGCGGTGCAACTTTGATACAATGGCGCCAAAGAAGGATAAGGCGCCTCCCCCATCTTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAG
AAGAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTTTTTTATCAAGGAACTTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAG
CTGGTCACTCCATCAATCCCGATAGGTTGA
Protein sequenceShow/hide protein sequence
MQLQTPKRKRKAYKKLNSAYLIRICSLSSLLHIPQYIQLRRCNFDTMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVFFYQGTYDKLLVEVPKYK
LVTPSIPIG