; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G080090 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G080090
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionGermin-like protein
Genome locationCicolChr04:34320899..34322449
RNA-Seq ExpressionCcUC04G080090
SyntenyCcUC04G080090
Gene Ontology termsGO:0048046 - apoplast (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR001929 - Germin
IPR006045 - Cupin 1
IPR011051 - RmlC-like cupin domain superfamily
IPR014710 - RmlC-like jelly roll fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052477.1 putative germin-like protein 2-1 [Cucumis melo var. makuwa]6.5e-2773.91Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL KG+VFVFP GLI+FQ+NIGHH A+AIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

XP_004134615.1 putative germin-like protein 2-1 [Cucumis sativus]1.4e-2469.57Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG LL GF+ +N ENRLITKTLNKG+VFVFP GL++FQ+NIG+  AVAIA L+SQNPGVI  + NAVFGSK  IP +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

XP_004134642.1 putative germin-like protein 2-1 [Cucumis sativus]3.8e-2775Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL+KG+VFVFP GLI+FQ+NIGHH AVAIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

XP_008439538.1 PREDICTED: putative germin-like protein 2-1 [Cucumis melo]5.0e-2775Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL KG+VFVFP GLI+FQ+NIGHH AVAIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

XP_038877837.1 LOW QUALITY PROTEIN: putative germin-like protein 2-1 [Benincasa hispida]3.0e-2469.57Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG LL GF+ +N ENRLITKTLNKG+VFVFP GL++FQ+NIG+  AVAIA L+SQNPGVI  + NAVFGSK  IP +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

TrEMBL top hitse value%identityAlignment
A0A0A0KIB9 Germin-like protein1.9e-2775Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL+KG+VFVFP GLI+FQ+NIGHH AVAIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

A0A0A0KKX1 Germin-like protein6.6e-2569.57Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG LL GF+ +N ENRLITKTLNKG+VFVFP GL++FQ+NIG+  AVAIA L+SQNPGVI  + NAVFGSK  IP +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

A0A1S3AZM4 Germin-like protein2.4e-2775Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL KG+VFVFP GLI+FQ+NIGHH AVAIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

A0A5A7UDA2 Germin-like protein3.2e-2773.91Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEGKLL GFI +N ENRLITKTL KG+VFVFP GLI+FQ+NIGHH A+AIA L+SQNPGVI  + NAVFGSK  IP DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

A0A5D3CN45 Germin-like protein1.9e-2470.65Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG LL GF+ +N ENRLITKTLNKG+VFVFP GLI+FQ+NIGH  AVAIA L+SQNPGVI  + NAVFGSK  I  +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

SwissProt top hitse value%identityAlignment
Q6K5P8 Putative germin-like protein 2-37.0e-2460.2Show/hide
Query:  HHCSLQYRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        H  +  + HP ATEI TVLEG L  GF+ +N EN+L TK +NKG+VFVFPKGL++FQ N G   AVAI  L+SQNPGVI  + NAVFGSK  I  DIL
Subjt:  HHCSLQYRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

Q6K5P9 Putative germin-like protein 2-21.2e-2363.04Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG L  GF+ +N EN+L TK LNKG+VFVFP+GL++FQ N G + AVA+A L+SQNPGVI  + NAVFGSK  I  DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

Q6K5Q0 Putative germin-like protein 2-12.0e-2362.22Show/hide
Query:  HPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        HP ATEI T+LEG L  GF+ +N EN+L TK LNKG+VFVFP+GLI+FQ N G    +A+A L+SQNPGVI  + NAVFGSK  I  DIL
Subjt:  HPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

Q6YZA9 Germin-like protein 8-23.9e-2261.7Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIG-HHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDILV
        + HP ATEI TVLEG L  GF+ +N +NRL++K LNKG+VFVFP+GLI+FQ N   H  AVAIA L+SQNPGVI  + NAVFGS   I  DIL+
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIG-HHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDILV

Q6YZZ2 Germin-like protein 8-75.6e-2160.22Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIG-HHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI TVLEG L  GF+ +N  N L +K LNKG+VFVFP+GLI+FQ N   H  AVA+A L+SQNPG I  + NAVFGSK  I  DIL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIG-HHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

Arabidopsis top hitse value%identityAlignment
AT3G05950.1 RmlC-like cupins superfamily protein3.1e-1954.84Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLE-NRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI  V+EG LL GF+ +N + NRL +K L  G+VFVFP G+I+FQ N+G   AVA A L SQNPG I  + +AVFGSK  I  +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLE-NRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

AT4G14630.1 germin-like protein 93.7e-2055.91Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLE-NRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI  V +G LL GFI++N + NRL  KTLN G+VFVFP+GLI+FQ N+G   AVAIA L+SQN GVI  + N +FGSK  +  ++L
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLE-NRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

AT5G38930.1 RmlC-like cupins superfamily protein1.3e-2056.52Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI  V  G LL GF+ +N +NRL TK LN+G+VFVFP+GLI+FQ NIG   AVA A L+SQNPGVI  +   VFG+   I  +IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

AT5G38940.1 RmlC-like cupins superfamily protein2.0e-2156.52Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI  V +G LL GF+ +N +NRL +K LN+G+VFVFP+GLI+FQ NIG   AVA A L+SQNPGVI  + N VFG+   I   IL
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL

AT5G38960.1 RmlC-like cupins superfamily protein5.2e-2258.7Show/hide
Query:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL
        + HP ATEI  V EG L  GF ++  ENRL  KTLNKG+VFVFP+GLI+FQ NIG   AVA A+L+SQNPGVI ++ N +FGSK  I  ++L
Subjt:  YRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGAVAIATLNSQNPGVIPLLINAVFGSKHVIPKDIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATGGGTTGCATGTGGCCAAAGACACCAACACAACCATTGGCTCTCAAGTAACTCTGGTGACCGTGGTGCAAATCTCAGGGCTCAACACTCTTGGCATCTCCTTGG
ATCACATCCACTTCGCCCCAGGGGGCATCACTGCTCCCTACAGTACAGGCACCCACATGCCACTGAAATCTCGACGGTCCTTGAAGGAAAGCTCTTGGCCGGCTTCATCG
CTAACAACCTTGAGAACCGTTTGATCACCAAGACATTGAACAAGGGCAATGTCTTTGTTTTCCCGAAAGGGTTGATTAACTTCCAACGAAATATCGGTCATCATGGAGCA
GTTGCTATTGCAACATTAAATAGCCAAAACCCAGGAGTTATACCATTGTTAATTAATGCAGTTTTTGGATCGAAACATGTCATCCCCAAGGATATTCTTGTACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATGGGTTGCATGTGGCCAAAGACACCAACACAACCATTGGCTCTCAAGTAACTCTGGTGACCGTGGTGCAAATCTCAGGGCTCAACACTCTTGGCATCTCCTTGG
ATCACATCCACTTCGCCCCAGGGGGCATCACTGCTCCCTACAGTACAGGCACCCACATGCCACTGAAATCTCGACGGTCCTTGAAGGAAAGCTCTTGGCCGGCTTCATCG
CTAACAACCTTGAGAACCGTTTGATCACCAAGACATTGAACAAGGGCAATGTCTTTGTTTTCCCGAAAGGGTTGATTAACTTCCAACGAAATATCGGTCATCATGGAGCA
GTTGCTATTGCAACATTAAATAGCCAAAACCCAGGAGTTATACCATTGTTAATTAATGCAGTTTTTGGATCGAAACATGTCATCCCCAAGGATATTCTTGTACATTAG
Protein sequenceShow/hide protein sequence
MQWVACGQRHQHNHWLSSNSGDRGANLRAQHSWHLLGSHPLRPRGHHCSLQYRHPHATEISTVLEGKLLAGFIANNLENRLITKTLNKGNVFVFPKGLINFQRNIGHHGA
VAIATLNSQNPGVIPLLINAVFGSKHVIPKDILVH