; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G080320 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G080320
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationCicolChr04:34466287..34467141
RNA-Seq ExpressionCcUC04G080320
SyntenyCcUC04G080320
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]7.5e-14499.29Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]3.4e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]8.9e-14599.3Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]7.5e-14498.94Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]1.0e-145100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein1.6e-14498.59Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein4.3e-14599.3Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein3.6e-14499.29Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein3.6e-14498.94Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein2.6e-14297.54Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPPVGRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPF VPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Subjt:  ARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'4.1e-4449.09Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP       
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP
                              MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP

Q58DW4 Small nuclear ribonucleoprotein-associated protein B'2.0e-4348.73Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+        PPP+GRG PPP       
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP
                              MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'1.1e-4449.08Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP       
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP
                      PP   + PMG PPTG        PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP

Q9PV94 Small nuclear ribonucleoprotein-associated protein B'1.0e-4248Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPG+GRAAGRG+P  AP+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP    PG+     G  PPP+ RG PPP       
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPP--PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP
                              MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PGM PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPP--PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'9.2e-4448.73Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP       
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP
                              MGPPP  +   GPP   PP  G P   P PGM PPP G   + GPP PG+ PP
Subjt:  AARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPP--PPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B4.9e-9375.44Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPVGRGMPPPVPPPQ

Query:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
            RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  FSAARPGGAPPQPF--PVPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein1.3e-8570.77Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  G+G PPP       
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFS

Query:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ
            G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Subjt:  AARPGGAPPQPFPVPPQFA--QRPMGPPPTGQVMRGPPPPPRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAACTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTCGGCAAGTTCATGGCCTTCGATCGGCA
TATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCGAAGGGTAAAAAGACTAATGAGGAACGTGACGAGCGTCGTACACTTGGGCTCGTTCTTC
TCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCTGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGACGT
GCCGCTGGTAGGGGTATCCCGACTGCTCCGTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGCGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAAT
ATCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAAGCTCCACCTC
CGGTCGGGAGAGGTATGCCTCCACCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTTCCTCCTCAATTTGCGCAGAGA
CCTATGGGACCTCCGCCAACCGGGCAGGTGATGAGGGGACCACCACCACCCCCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCCCCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAACTACCGGATGAGGGTCACCATCCAAGATGGTCGCCAATTGGTCGGCAAGTTCATGGCCTTCGATCGGCA
TATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCAGCGAAGGGTAAAAAGACTAATGAGGAACGTGACGAGCGTCGTACACTTGGGCTCGTTCTTC
TCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCACCTGCTGAAGAGTCCCGTGCTAAGGCTGTCAATGCTGCGGCTATGGCTGGGCCTGGTATTGGACGT
GCCGCTGGTAGGGGTATCCCGACTGCTCCGTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGCGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAAT
ATCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCAGGGCAAGCTCCACCTC
CGGTCGGGAGAGGTATGCCTCCACCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTTCCTCCTCAATTTGCGCAGAGA
CCTATGGGACCTCCGCCAACCGGGCAGGTGATGAGGGGACCACCACCACCCCCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGG
CGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCCCCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQR
PMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ