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CcUC04G080390 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G080390
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRibosome biogenesis protein
Genome locationCicolChr04:34569176..34570392
RNA-Seq ExpressionCcUC04G080390
SyntenyCcUC04G080390
Gene Ontology termsGO:0030684 - preribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037498.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]7.6e-1672.86Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP EEPKKKK N NGSKKRKE+KLKA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
KAA0062508.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]2.9e-1571.43Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K KA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
KAG7023365.1 hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1573.53Show/hide
Query:  LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K KA  +PS MEM
Subjt:  LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
XP_016900348.1 PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo]2.9e-1571.43Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K KA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]4.5e-1672.86Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPLG+I LHLE+TQPVEEPKKKK N NGSKKRKE+K KA  +PS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein1.8e-1570Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K KA  +PS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
A0A1S4DWK8 putative ribosome biogenesis protein slx9-like1.4e-1571.43Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K KA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
A0A5A7V4K7 Putative ribosome biogenesis protein slx9-like1.4e-1571.43Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K KA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like3.7e-1672.86Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPL ++QLHLE TQP EEPKKKK N NGSKKRKE+KLKA  RPS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
A0A6J1JDX4 putative ribosome biogenesis protein slx9-like1.8e-1571.43Show/hide
Query:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
        L   LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K KA  +PS MEM
Subjt:  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein3.7e-0850Show/hide
Query:  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKRNINGSKKRKEEKLK
        +P P   +N      L L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK N NGSKKR ++K K
Subjt:  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKRNINGSKKRKEEKLK
AT2G01640.2 unknown protein3.7e-0850Show/hide
Query:  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKRNINGSKKRKEEKLK
        +P P   +N      L L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK N NGSKKR ++K K
Subjt:  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKRNINGSKKRKEEKLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAA
ACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTA
AATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAA
GAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAA
ACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTA
AATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAA
GAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATATATTTATGGGCATTTTAATTG
GTAGCACAGTTCAGCTCCCTTGAGATCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGTAGATGATTATTGTTGATGAAGCAATTGTTCA
ACTAGTCATGTTCCATAAGATTATGCATTTTCAAACTATTTTAGATATTATAATCAATCCACAGTTAACATTGTGATTTTACTCGCACAGTTATATGACCCCAT
Protein sequenceShow/hide protein sequence
MNPLKAGYKALELIERDILTQSQNSSPCFHLHAGFPKLCQTAQKKCLQMPKPIFSLNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRK
EEKLKACTRPSPMEM