; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC04G080660 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC04G080660
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptioncytochrome c6, chloroplastic
Genome locationCicolChr04:34835094..34838329
RNA-Seq ExpressionCcUC04G080660
SyntenyCcUC04G080660
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR009056 - Cytochrome c-like domain
IPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134523.1 cytochrome c6, chloroplastic [Cucumis sativus]7.3e-7482.18Show/hide
Query:  QMHLLSVTSNFC---PTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQ
        +MHLLSVTS+F     +P+CFP  GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GC    L LA+T EIERGGALFNQ+CIGCHDGGGNIIQ
Subjt:  QMHLLSVTSNFC---PTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQ

Query:  PGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        PGATLFS DLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD+GWPNP
Subjt:  PGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

XP_008439440.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]2.3e-7582.66Show/hide
Query:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP
        M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN TPGC    L LA+T EIERGGALFNQACIGCHDGGGNIIQP
Subjt:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP

Query:  GATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        GATLFS DLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD+GWPNP
Subjt:  GATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]2.3e-7582.94Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC     ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGAT
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT

Query:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        LFS DLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQAD+GWPNP
Subjt:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]1.1e-7482.35Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QV ILKTL PPLIAVLIAL PLN TPGC     ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGAT
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT

Query:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        LFS DLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQAD+GWPNP
Subjt:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

XP_038877732.1 cytochrome c6, chloroplastic [Benincasa hispida]1.0e-8389.41Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
        MHLLS TSNFCPTPHCFP+K KRR  VCQIRTQVKIL +L PPLIAV +ALSPLN TPGC    LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT

Query:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        LFS DLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QAD+GWPNP
Subjt:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein2.9e-6885.53Show/hide
Query:  VKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIY
        + GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GC    L LA+T EIERGGALFNQ+CIGCHDGGGNIIQPGATLFS DLERNGADAEEEIY
Subjt:  VKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIY

Query:  RITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        RITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD+GWPNP
Subjt:  RITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

A0A1S3AYD3 cytochrome c6, chloroplastic1.1e-7582.66Show/hide
Query:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP
        M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN TPGC    L LA+T EIERGGALFNQACIGCHDGGGNIIQP
Subjt:  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP

Query:  GATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        GATLFS DLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD+GWPNP
Subjt:  GATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

A0A6J1CXZ2 cytochrome c6, chloroplastic1.5e-6977.78Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIR-TQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA
        MHLLS  S+F    HCF +KG+R  AVCQ R  Q+KI K+  PPLIAVLIALSP+  TPGC      LAQT EIERGGALF+Q+CIGCHDGGGNIIQPGA
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIR-TQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGA

Query:  TLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        TLFS DLERNGAD EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQAD+GW NP
Subjt:  TLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

A0A6J1EG38 cytochrome c6, chloroplastic1.1e-7582.94Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
        M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC     ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGAT
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT

Query:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        LFS DLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQAD+GWPNP
Subjt:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

A0A6J1KPJ4 cytochrome c6, chloroplastic3.0e-7380.59Show/hide
Query:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT
        M LLSV S+F  +PHCF +K +RR  VC++R QVK LK L PPLIAVLIAL PLN TPGC     ALAQ+AEIERGGALF+ ACIGCHDGGGNIIQPGAT
Subjt:  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGAT

Query:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP
        LFS DLERNGAD+EEEIY+ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQAD+GWPNP
Subjt:  LFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP

SwissProt top hitse value%identityAlignment
P00110 Cytochrome c64.5e-1038.78Show/hide
Query:  AEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEI-YRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGW
        A+IE G  +F   C  CH GG N+I P  TL    LE NG +A   I Y++T  GK  MP             FG RL + +I  +A +V  Q++QGW
Subjt:  AEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEI-YRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADQGW

P07497 Cytochrome c62.0e-1033.98Show/hide
Query:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD
        +A AQ A++  GG +F+  C  CH GG N++ P  TL   DL++ G  + E I      GKG MP FG             +L  ++I  +A +V  Q++
Subjt:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD

Query:  QGW
        +GW
Subjt:  QGW

P25935 Cytochrome c62.0e-1033.98Show/hide
Query:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD
        +A AQ A++  GG +F+  C  CH GG N++ P  TL   DL++ G  + E I      GKG MP FG             +L  ++I  +A +V  Q++
Subjt:  LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD

Query:  QGW
        +GW
Subjt:  QGW

P46445 Cytochrome c68.5e-0935.29Show/hide
Query:  IALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQ
        IAL  L    G   LG   A  A++  G A+F   C  CH+GG N I P  TL   DLE NG ++   I      G G MPGF      +G      R+ 
Subjt:  IALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQ

Query:  EEEIRLLAKFVKIQADQGW
        + ++  +A +V  QA++GW
Subjt:  EEEIRLLAKFVKIQADQGW

Q93VA3 Cytochrome c6, chloroplastic2.4e-5172.18Show/hide
Query:  ILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENC
        +LK L PPL AVL+A+SP+   P  LG      QT +I+RG  LFN+ACIGCHD GGNIIQPGATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C
Subjt:  ILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENC

Query:  KPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWP
         PRGQCTFGPRLQ+EEI+LLA+FVK QADQGWP
Subjt:  KPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWP

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c1.7e-5272.18Show/hide
Query:  ILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENC
        +LK L PPL AVL+A+SP+   P  LG      QT +I+RG  LFN+ACIGCHD GGNIIQPGATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C
Subjt:  ILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENC

Query:  KPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWP
         PRGQCTFGPRLQ+EEI+LLA+FVK QADQGWP
Subjt:  KPRGQCTFGPRLQEEEIRLLAKFVKIQADQGWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCAGCATTTATTTTGATTTGGTGTAAAAAGGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACCGTTTGTCCGACCCGCTTATC
ACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCGCGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCG
TCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTTTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTT
TGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGG
TCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACAC
TCTTTTCAGGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCA
AGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTGTTGGCGAAGTTTGTAAAGATACAGGCAGATCAGGGGTGGCCAAACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATATCAGCATTTATTTTGATTTGGTGTAAAAAGGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACCGTTTGTCCGACCCGCTTATC
ACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCGCGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCG
TCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTTTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTT
TGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGG
TCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACAC
TCTTTTCAGGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCA
AGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTGTTGGCGAAGTTTGTAAAGATACAGGCAGATCAGGGGTGGCCAAACCCATAGACGGGTAT
TGATTTTTTGGGCCAGATTATTATTGCCTTGTACCAAGTACTAATGTATTGTTTACTTTGTATAAAATTGAACTATTACCTGTCAATATTTTCCAAAGTCCCATCTGAAT
CAATGGCCTCACATATATATATAGATGCCTCTTCTATAGCTATCATGACAACTGAAAAGCTAGGATGGACTGTTGCTATCATTATATTGATAACTAGCAACATTCAAACA
CTGTAATCATGCATCTTTCTAAAAGCGATATCCATACTGCTATTGCACATGAATTGATCATAAAACAGAGGACAAAAGTAAACTTAGTCTCAAATATAACTGAAGTACAG
GAATATATATATATATGCACACATGCCAATTTGAAGAGTAGAATGCATATTATGATGCACTTTTGACTTGTTCGTCAACATTCTCCTTTGAAGATTAAATTTGTTGGATT
GGTTCCTAGAGAAGATGGTTGAAGATTAGGAAAATGATGAGGAACATGGCACGAACATAATATGAGGTGGGTTTATTGAGAGCATTCTTCCTGCTTATTAGGTGAGTCCA
ATTGAATTCATCAG
Protein sequenceShow/hide protein sequence
MISAFILIWCKKDGTKFSCRKTKDELERSTVCPTRLSLWIGQPQPNWSLGQQARQPQAHPRVQDPPKRREPARVTASETKEIQMHLLSVTSNFCPTPHCFPVKGKRRIAV
CQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSGDLERNGADAEEEIYRITYYGKGRMPGFGENCKP
RGQCTFGPRLQEEEIRLLAKFVKIQADQGWPNP