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CcUC05G082130 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC05G082130
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionexosome complex component RRP41
Genome locationCicolChr05:1083701..1085704
RNA-Seq ExpressionCcUC05G082130
SyntenyCcUC05G082130
Gene Ontology termsNA
InterPro domainsIPR027408 - PNPase/RNase PH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS38750.1 3'-5'-exoribonuclease family protein [Actinidia rufa]2.5e-0444.58Show/hide
Query:  NLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        N  F  TRSA INAAT+ALA AGI M D VTSC+AGYLN  +L+   ++                    TL+Q DAK   +TF
Subjt:  NLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF

RRT83676.1 hypothetical protein B296_00017075 [Ensete ventricosum]2.5e-0449.28Show/hide
Query:  CMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR--TLIQFDAKTC
        C+ +  + +F   TRSA INAAT+ALA AGI M D VTSC+AGYL+   L+G   L+  T I F    C
Subjt:  CMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR--TLIQFDAKTC

XP_038902879.1 exosome complex component RRP41 homolog isoform X1 [Benincasa hispida]1.0e-0548.78Show/hide
Query:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV
        M IGNPLS IVISFRC  +                          RSA  NAAT+AL  AGI  SDNVTS +AGYLN ASL+
Subjt:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLV

XP_038902887.1 exosome complex component RRP41 homolog isoform X2 [Benincasa hispida]2.7e-0648.24Show/hide
Query:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNL
        M IGNPLS IVISFRC  +                          RSA  NAAT+AL  AGI  SDNVTS +AGYLN ASL+ N+
Subjt:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNL

XP_038902919.1 exosome complex component RRP41 homolog isoform X3 [Benincasa hispida]2.0e-0649.4Show/hide
Query:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVG
        M IGNPLS IVISFRC  +                          RSA  NAAT+AL  AGI  SDNVTS +AGYLN ASL+G
Subjt:  MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVG

TrEMBL top hitse value%identityAlignment
A0A427B5F4 RNase_PH domain-containing protein1.2e-0449.28Show/hide
Query:  CMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR--TLIQFDAKTC
        C+ +  + +F   TRSA INAAT+ALA AGI M D VTSC+AGYL+   L+G   L+  T I F    C
Subjt:  CMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR--TLIQFDAKTC

A0A5K1DNT7 Uncharacterized protein (Fragment)1.6e-0469.77Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFL
        TRSA INAAT+ALA AGI M D VTSC+AGYLN   L+GN  L
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFL

A0A7J0DN15 3'-5'-exoribonuclease family protein1.2e-0444.58Show/hide
Query:  NLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        N  F  TRSA INAAT+ALA AGI M D VTSC+AGYLN  +L+   ++                    TL+Q DAK   +TF
Subjt:  NLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF

A0A7N0RCP5 RNase_PH domain-containing protein9.2e-0552.11Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGN-------------LFLRTLIQFDAKTCEETF
        TRSA INAAT+ALA AGI MSD VTSC+AGYLN   L+ +             L   TL+Q DAK   +TF
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGN-------------LFLRTLIQFDAKTCEETF

A0A7N0RDQ1 Uncharacterized protein3.5e-0446.75Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        TRSA INAAT+ALA AGI MSD VTSC+AGYLN   L+   ++                    TL+Q DAK   +TF
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF

SwissProt top hitse value%identityAlignment
Q9SP08 Exosome complex component RRP41 homolog4.0e-0542.86Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        TRSA INAAT+ALA AGI M D   SC+AGYLN   L+   ++                    +L+Q DAK   ETF
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF

Arabidopsis top hitse value%identityAlignment
AT3G61620.1 3'-5'-exoribonuclease family protein2.8e-0642.86Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        TRSA INAAT+ALA AGI M D   SC+AGYLN   L+   ++                    +L+Q DAK   ETF
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF

AT3G61620.2 3'-5'-exoribonuclease family protein2.8e-0642.86Show/hide
Query:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF
        TRSA INAAT+ALA AGI M D   SC+AGYLN   L+   ++                    +L+Q DAK   ETF
Subjt:  TRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLR-------------------TLIQFDAKTCEETF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATTGGTAACCCTTTATCTGAAATTGTGATCTCCTTCAGGTGCACTGTGAGTAGAGTACTACACCATGGTGGATTTCAGTATGGAGATTGCATGGGAAAA
CCTAATTTCAATCTGTTTTTCTGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCTACTGCTGGAATTTCCATGAGTGATAATGTTACTTCC
TGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTTCGATGCTAAAACATGTGAGGAAACCTTTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTATTGGTAACCCTTTATCTGAAATTGTGATCTCCTTCAGGTGCACTGTGAGTAGAGTACTACACCATGGTGGATTTCAGTATGGAGATTGCATGGGAAAA
CCTAATTTCAATCTGTTTTTCTGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCTACTGCTGGAATTTCCATGAGTGATAATGTTACTTCC
TGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTTCGATGCTAAAACATGTGAGGAAACCTTTAGGTGA
Protein sequenceShow/hide protein sequence
MFIGNPLSEIVISFRCTVSRVLHHGGFQYGDCMGKPNFNLFFCTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLRTLIQFDAKTCEETFR